Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CACNA1FO60840 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.84■□□□□ 0.93
CACNA1FO60840 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CACNA1FO60840 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CACNA1FO60840 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.84■□□□□ 0.93
CACNA1FO60840 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC20.84■□□□□ 0.93
CACNA1FO60840 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC20.84■□□□□ 0.93
CACNA1FO60840 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC20.84■□□□□ 0.93
CACNA1FO60840 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 SPCS2P1-201ENST00000561636 679 ntBASIC20.84■□□□□ 0.93
CACNA1FO60840 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC20.84■□□□□ 0.93
CACNA1FO60840 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1FO60840 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CACNA1FO60840 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CACNA1FO60840 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
CACNA1FO60840 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
CACNA1FO60840 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CACNA1FO60840 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC20.83■□□□□ 0.93
CACNA1FO60840 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
CACNA1FO60840 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CACNA1FO60840 BAD-202ENST00000394531 631 ntTSL 3 BASIC20.83■□□□□ 0.93
CACNA1FO60840 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
CACNA1FO60840 EEF1DP4-201ENST00000446006 880 ntBASIC20.83■□□□□ 0.93
CACNA1FO60840 BAD-207ENST00000544785 525 ntTSL 3 BASIC20.83■□□□□ 0.93
CACNA1FO60840 AC005498.2-205ENST00000593218 784 ntBASIC20.83■□□□□ 0.93
CACNA1FO60840 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CACNA1FO60840 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC20.83■□□□□ 0.93
CACNA1FO60840 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC20.83■□□□□ 0.93
CACNA1FO60840 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.83■□□□□ 0.93
CACNA1FO60840 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CACNA1FO60840 AC092171.3-201ENST00000610122 2651 ntBASIC20.83■□□□□ 0.93
CACNA1FO60840 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.83■□□□□ 0.93
CACNA1FO60840 U82695.1-201ENST00000635752 1889 ntBASIC20.83■□□□□ 0.93
CACNA1FO60840 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.92
CACNA1FO60840 NKILA-202ENST00000614771 2598 ntBASIC20.83■□□□□ 0.92
CACNA1FO60840 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
CACNA1FO60840 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CACNA1FO60840 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CACNA1FO60840 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC20.83■□□□□ 0.92
CACNA1FO60840 AC004449.1-201ENST00000564240 433 ntBASIC20.83■□□□□ 0.92
CACNA1FO60840 RARRES2P9-201ENST00000565168 469 ntBASIC20.83■□□□□ 0.92
CACNA1FO60840 AC027796.2-201ENST00000575326 344 ntBASIC20.83■□□□□ 0.92
CACNA1FO60840 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC20.83■□□□□ 0.92
CACNA1FO60840 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CACNA1FO60840 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.82■□□□□ 0.92
CACNA1FO60840 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC20.82■□□□□ 0.92
CACNA1FO60840 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CACNA1FO60840 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.82■□□□□ 0.92
CACNA1FO60840 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC20.82■□□□□ 0.92
CACNA1FO60840 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC20.82■□□□□ 0.92
CACNA1FO60840 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC20.82■□□□□ 0.92
CACNA1FO60840 LINC01144-201ENST00000626198 1710 ntBASIC20.82■□□□□ 0.92
CACNA1FO60840 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 AL589702.1-201ENST00000641229 1509 ntBASIC20.82■□□□□ 0.92
CACNA1FO60840 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC20.82■□□□□ 0.92
CACNA1FO60840 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CACNA1FO60840 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1FO60840 PCDHA12-202ENST00000613593 2588 ntBASIC20.82■□□□□ 0.92
CACNA1FO60840 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC20.81■□□□□ 0.92
CACNA1FO60840 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1FO60840 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.81■□□□□ 0.92
CACNA1FO60840 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1FO60840 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC20.81■□□□□ 0.92
CACNA1FO60840 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CACNA1FO60840 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.81■□□□□ 0.92
CACNA1FO60840 IGHV3-62-201ENST00000520057 340 ntBASIC20.81■□□□□ 0.92
CACNA1FO60840 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1FO60840 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1FO60840 AL133215.2-201ENST00000609242 977 ntBASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms