Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SIX2Q9NPC8 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 PRSS29P-201ENST00000440800 595 ntBASIC17.97■□□□□ 0.47
SIX2Q9NPC8 AC009947.1-201ENST00000444350 727 ntBASIC17.97■□□□□ 0.47
SIX2Q9NPC8 AC009078.2-202ENST00000463353 338 ntBASIC17.97■□□□□ 0.47
SIX2Q9NPC8 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 IGHV3-22-201ENST00000520721 359 ntBASIC17.97■□□□□ 0.47
SIX2Q9NPC8 UNC93B6-202ENST00000528242 690 ntBASIC17.97■□□□□ 0.47
SIX2Q9NPC8 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SIX2Q9NPC8 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.96■□□□□ 0.47
SIX2Q9NPC8 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
SIX2Q9NPC8 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.96■□□□□ 0.46
SIX2Q9NPC8 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 PCGF3-213ENST00000620529 1899 ntBASIC17.95■□□□□ 0.46
SIX2Q9NPC8 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 AC012569.1-201ENST00000591191 1524 ntBASIC17.95■□□□□ 0.46
SIX2Q9NPC8 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 HMGA1P7-201ENST00000406908 502 ntBASIC17.95■□□□□ 0.46
SIX2Q9NPC8 CXCL1P1-201ENST00000502804 216 ntBASIC17.95■□□□□ 0.46
SIX2Q9NPC8 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 AP001350.2-201ENST00000625104 1094 ntBASIC17.95■□□□□ 0.46
SIX2Q9NPC8 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.95■□□□□ 0.46
SIX2Q9NPC8 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms