Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.11■□□□□ 0.17
PIF1Q9H611 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.11■□□□□ 0.17
PIF1Q9H611 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PIF1Q9H611 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.11■□□□□ 0.17
PIF1Q9H611 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
PIF1Q9H611 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PIF1Q9H611 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.11■□□□□ 0.17
PIF1Q9H611 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
PIF1Q9H611 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.11■□□□□ 0.17
PIF1Q9H611 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PIF1Q9H611 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PIF1Q9H611 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PIF1Q9H611 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PIF1Q9H611 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PIF1Q9H611 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PIF1Q9H611 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.11■□□□□ 0.17
PIF1Q9H611 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.11■□□□□ 0.17
PIF1Q9H611 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
PIF1Q9H611 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PIF1Q9H611 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PIF1Q9H611 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PIF1Q9H611 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PIF1Q9H611 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PIF1Q9H611 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.11■□□□□ 0.17
PIF1Q9H611 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PIF1Q9H611 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PIF1Q9H611 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PIF1Q9H611 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.1■□□□□ 0.17
PIF1Q9H611 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PIF1Q9H611 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.1■□□□□ 0.17
PIF1Q9H611 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 AC024909.3-201ENST00000611513 2257 ntBASIC16.1■□□□□ 0.17
PIF1Q9H611 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.1■□□□□ 0.17
PIF1Q9H611 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PIF1Q9H611 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 KLF4P1-201ENST00000412782 1185 ntBASIC16.1■□□□□ 0.17
PIF1Q9H611 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.1■□□□□ 0.17
PIF1Q9H611 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PIF1Q9H611 AC091607.1-201ENST00000490318 1060 ntBASIC16.1■□□□□ 0.17
PIF1Q9H611 KRT18P35-201ENST00000510488 1269 ntBASIC16.1■□□□□ 0.17
PIF1Q9H611 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
PIF1Q9H611 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.1■□□□□ 0.17
PIF1Q9H611 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.1■□□□□ 0.17
PIF1Q9H611 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.1■□□□□ 0.17
PIF1Q9H611 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.1■□□□□ 0.17
PIF1Q9H611 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
PIF1Q9H611 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PIF1Q9H611 AC116407.4-201ENST00000623319 1061 ntBASIC16.1■□□□□ 0.17
PIF1Q9H611 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.1■□□□□ 0.17
PIF1Q9H611 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC16.1■□□□□ 0.17
PIF1Q9H611 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.1■□□□□ 0.17
PIF1Q9H611 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.1■□□□□ 0.17
PIF1Q9H611 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.1■□□□□ 0.17
PIF1Q9H611 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PIF1Q9H611 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PIF1Q9H611 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PIF1Q9H611 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.09■□□□□ 0.17
PIF1Q9H611 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
PIF1Q9H611 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.09■□□□□ 0.17
PIF1Q9H611 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.09■□□□□ 0.17
PIF1Q9H611 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.09■□□□□ 0.17
PIF1Q9H611 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PIF1Q9H611 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.09■□□□□ 0.17
PIF1Q9H611 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.09■□□□□ 0.17
PIF1Q9H611 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.09■□□□□ 0.17
PIF1Q9H611 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.09■□□□□ 0.17
PIF1Q9H611 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.09■□□□□ 0.17
PIF1Q9H611 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PIF1Q9H611 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.09■□□□□ 0.17
PIF1Q9H611 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.09■□□□□ 0.17
PIF1Q9H611 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PIF1Q9H611 AC091076.1-201ENST00000610741 619 ntBASIC16.09■□□□□ 0.17
PIF1Q9H611 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms