Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 CD74-212ENST00000524315 584 ntTSL 5 BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 AL583810.1-201ENST00000553344 1045 ntBASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 AC015936.2-201ENST00000593177 259 ntBASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 AC010319.3-201ENST00000597028 470 ntBASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 TECR-220ENST00000600083 1204 ntTSL 2 BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 MIR8072-201ENST00000614241 80 ntBASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
ZNF541Q9H0D2 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 SPDYE17-201ENST00000412399 783 ntBASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 GALT-202ENST00000450095 1280 ntTSL 2 BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
ZNF541Q9H0D2 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ZNF541Q9H0D2 AC093525.8-201ENST00000624099 1342 ntBASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 AC018665.1-201ENST00000622927 1362 ntBASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.82■□□□□ 0.76
ZNF541Q9H0D2 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF541Q9H0D2 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
ZNF541Q9H0D2 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF541Q9H0D2 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
ZNF541Q9H0D2 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC19.81■□□□□ 0.76
ZNF541Q9H0D2 STX1A-203ENST00000395155 783 ntTSL 2 BASIC19.81■□□□□ 0.76
ZNF541Q9H0D2 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms