Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 GNRHR2-203ENST00000581100 1187 ntBASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 BRI3BPP1-201ENST00000594224 787 ntBASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 AC132192.2-201ENST00000596206 1147 ntBASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.67■□□□□ 0.26
COL25A1Q9BXS0 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 CLUHP6-201ENST00000580789 941 ntBASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 WDR7-208ENST00000589935 544 ntTSL 4 BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 AC005702.4-201ENST00000618393 416 ntBASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 AC131009.4-201ENST00000624048 1740 ntBASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 AL049812.1-201ENST00000432563 2267 ntBASIC16.66■□□□□ 0.26
COL25A1Q9BXS0 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 AL161938.1-201ENST00000569833 2180 ntBASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 TOP3BP1-201ENST00000420768 1380 ntBASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 MSRA-203ENST00000441698 788 ntTSL 2 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 NUP210P1-202ENST00000504322 710 ntBASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 NSD1-211ENST00000511258 809 ntTSL 3 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 AL020996.1-203ENST00000536896 2307 ntBASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL25A1Q9BXS0 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.26
COL25A1Q9BXS0 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
COL25A1Q9BXS0 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 AC006001.1-201ENST00000325130 474 ntBASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 PFN2-202ENST00000423691 911 ntTSL 2 BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 POM121L10P-201ENST00000436994 1285 ntBASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC16.64■□□□□ 0.25
COL25A1Q9BXS0 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms