Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.17■□□□□ 0.5
CCDC42Q96M95 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.17■□□□□ 0.5
CCDC42Q96M95 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CCDC42Q96M95 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 NFIC-211ENST00000641145 8399 ntBASIC18.16■□□□□ 0.5
CCDC42Q96M95 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 AL139011.1-202ENST00000642063 584 ntBASIC18.16■□□□□ 0.5
CCDC42Q96M95 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CCDC42Q96M95 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 AC243591.1-201ENST00000452967 1364 ntBASIC18.16■□□□□ 0.5
CCDC42Q96M95 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.16■□□□□ 0.5
CCDC42Q96M95 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 ABCD1P5-201ENST00000445663 754 ntBASIC18.15■□□□□ 0.5
CCDC42Q96M95 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 AC074051.2-201ENST00000565115 352 ntBASIC18.15■□□□□ 0.5
CCDC42Q96M95 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 TERC-201ENST00000602385 541 ntBASIC18.15■□□□□ 0.5
CCDC42Q96M95 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 AC073592.4-201ENST00000623827 446 ntBASIC18.15■□□□□ 0.5
CCDC42Q96M95 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CCDC42Q96M95 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CCDC42Q96M95 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms