Protein–RNA interactions for Protein: Q96GM5

SMARCD1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1Q96GM5 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 AC016027.1-202ENST00000607927 1699 ntBASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
SMARCD1Q96GM5 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 KRT8P48-201ENST00000515599 1220 ntBASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 AL603756.1-201ENST00000606511 2163 ntBASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SMARCD1Q96GM5 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 AC004461.1-201ENST00000412461 403 ntBASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 AC004835.2-201ENST00000603762 682 ntBASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
SMARCD1Q96GM5 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms