Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC124947.2-201ENST00000547118 1133 ntBASIC16.3■□□□□ 0.2
LMX1AQ8TE12 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 AC138761.1-201ENST00000584393 385 ntBASIC16.3■□□□□ 0.2
LMX1AQ8TE12 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 AC068880.1-201ENST00000507289 2297 ntBASIC16.3■□□□□ 0.2
LMX1AQ8TE12 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 LINC00895-201ENST00000629028 1637 ntBASIC16.3■□□□□ 0.2
LMX1AQ8TE12 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
LMX1AQ8TE12 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.29■□□□□ 0.2
LMX1AQ8TE12 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.29■□□□□ 0.2
LMX1AQ8TE12 COX20P2-201ENST00000452636 358 ntBASIC16.29■□□□□ 0.2
LMX1AQ8TE12 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 AC069120.2-201ENST00000524091 540 ntBASIC16.29■□□□□ 0.2
LMX1AQ8TE12 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 MIR4453-201ENST00000584019 89 ntBASIC16.29■□□□□ 0.2
LMX1AQ8TE12 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LMX1AQ8TE12 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 CROCCP1-201ENST00000426910 5675 ntBASIC16.28■□□□□ 0.2
LMX1AQ8TE12 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 WDR53-204ENST00000433160 887 ntTSL 5 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 AL512638.1-201ENST00000457493 794 ntBASIC16.28■□□□□ 0.2
LMX1AQ8TE12 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 AC105233.2-201ENST00000523697 349 ntBASIC16.28■□□□□ 0.2
LMX1AQ8TE12 AF228730.5-201ENST00000530288 346 ntBASIC16.28■□□□□ 0.2
LMX1AQ8TE12 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 AL133373.2-201ENST00000623187 2828 ntBASIC16.28■□□□□ 0.2
LMX1AQ8TE12 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.28■□□□□ 0.2
LMX1AQ8TE12 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
LMX1AQ8TE12 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms