Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMC1BQ8NDV3 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 RBM39-205ENST00000397370 612 ntTSL 2 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 AL139327.4-201ENST00000612362 153 ntBASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 AL021578.1-201ENST00000613646 709 ntBASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC19.73■□□□□ 0.75
SMC1BQ8NDV3 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 AC020763.4-201ENST00000623414 4170 ntBASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 AL589987.1-201ENST00000453380 819 ntBASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 C2orf69P2-201ENST00000562032 1123 ntBASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 AL365330.1-201ENST00000607459 531 ntBASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 AC015967.2-201ENST00000624092 234 ntBASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 AC006435.4-201ENST00000625037 234 ntBASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 AL356737.1-201ENST00000634391 234 ntBASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMC1BQ8NDV3 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 TOP3BP1-201ENST00000420768 1380 ntBASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC1BQ8NDV3 RNA5SP410-201ENST00000516285 106 ntBASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms