Protein–RNA interactions for Protein: Q8N1V8

LINC01561, Uncharacterized protein encoded by LINC01561, humanhuman

Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01561Q8N1V8 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 TLE1-202ENST00000376484 666 ntTSL 3 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 PRYP5-201ENST00000451909 266 ntBASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 CDV3-207ENST00000508481 661 ntTSL 3 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 NTF6B-201ENST00000591913 560 ntBASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 AL590326.2-201ENST00000625139 305 ntBASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 PKD1P5-201ENST00000532415 10291 ntBASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC11.31□□□□□ -0.6
LINC01561Q8N1V8 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 ACE-204ENST00000428043 5120 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 AC243591.1-201ENST00000452967 1364 ntBASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC11.3□□□□□ -0.6
LINC01561Q8N1V8 KRT18P57-201ENST00000443599 1254 ntBASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms