Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.27■□□□□ 0.2
FOXA1P55317 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.27■□□□□ 0.2
FOXA1P55317 AC002310.6-201ENST00000624451 1377 ntBASIC16.27■□□□□ 0.2
FOXA1P55317 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA1P55317 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXA1P55317 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA1P55317 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA1P55317 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
FOXA1P55317 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
FOXA1P55317 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
FOXA1P55317 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA1P55317 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA1P55317 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXA1P55317 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXA1P55317 PTCHD3P3-201ENST00000403073 906 ntBASIC16.27■□□□□ 0.2
FOXA1P55317 AC087163.2-201ENST00000457299 853 ntBASIC16.27■□□□□ 0.2
FOXA1P55317 KRT18P31-201ENST00000506277 1292 ntBASIC16.27■□□□□ 0.2
FOXA1P55317 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXA1P55317 MIR4492-201ENST00000581627 80 ntBASIC16.27■□□□□ 0.2
FOXA1P55317 MPDU1-223ENST00000582151 728 ntBASIC16.27■□□□□ 0.2
FOXA1P55317 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.27■□□□□ 0.2
FOXA1P55317 MTDHP4-201ENST00000600287 670 ntBASIC16.27■□□□□ 0.2
FOXA1P55317 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.27■□□□□ 0.2
FOXA1P55317 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC16.27■□□□□ 0.2
FOXA1P55317 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.27■□□□□ 0.2
FOXA1P55317 AC004706.3-202ENST00000621574 984 ntBASIC16.27■□□□□ 0.2
FOXA1P55317 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.27■□□□□ 0.2
FOXA1P55317 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA1P55317 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA1P55317 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXA1P55317 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA1P55317 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA1P55317 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA1P55317 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.27■□□□□ 0.19
FOXA1P55317 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC16.27■□□□□ 0.19
FOXA1P55317 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.27■□□□□ 0.19
FOXA1P55317 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA1P55317 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA1P55317 AC022188.1-201ENST00000620960 1664 ntBASIC16.27■□□□□ 0.19
FOXA1P55317 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA1P55317 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
FOXA1P55317 AL031731.1-201ENST00000642131 2094 ntBASIC16.26■□□□□ 0.19
FOXA1P55317 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXA1P55317 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 GGT4P-201ENST00000623672 1708 ntBASIC16.26■□□□□ 0.19
FOXA1P55317 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXA1P55317 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.26■□□□□ 0.19
FOXA1P55317 UPK3BP1-201ENST00000428678 509 ntBASIC16.26■□□□□ 0.19
FOXA1P55317 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.26■□□□□ 0.19
FOXA1P55317 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXA1P55317 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXA1P55317 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.26■□□□□ 0.19
FOXA1P55317 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.26■□□□□ 0.19
FOXA1P55317 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.26■□□□□ 0.19
FOXA1P55317 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.26■□□□□ 0.19
FOXA1P55317 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
FOXA1P55317 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXA1P55317 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.26■□□□□ 0.19
FOXA1P55317 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
FOXA1P55317 CROCCP1-201ENST00000426910 5675 ntBASIC16.26■□□□□ 0.19
FOXA1P55317 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
FOXA1P55317 AL365203.3-201ENST00000609742 2057 ntBASIC16.26■□□□□ 0.19
FOXA1P55317 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXA1P55317 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.26■□□□□ 0.19
FOXA1P55317 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
FOXA1P55317 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
FOXA1P55317 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXA1P55317 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
FOXA1P55317 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.25■□□□□ 0.19
FOXA1P55317 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
FOXA1P55317 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
FOXA1P55317 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
FOXA1P55317 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
FOXA1P55317 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FOXA1P55317 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms