Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MTND6P24-201ENST00000440466 518 ntBASIC14.62□□□□□ -0.07
COL8A1P27658 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.62□□□□□ -0.07
COL8A1P27658 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC14.62□□□□□ -0.07
COL8A1P27658 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.62□□□□□ -0.07
COL8A1P27658 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.62□□□□□ -0.07
COL8A1P27658 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC14.62□□□□□ -0.07
COL8A1P27658 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC14.62□□□□□ -0.07
COL8A1P27658 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.62□□□□□ -0.07
COL8A1P27658 AC007431.3-201ENST00000623221 587 ntBASIC14.62□□□□□ -0.07
COL8A1P27658 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC14.62□□□□□ -0.07
COL8A1P27658 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
COL8A1P27658 FZD10-202ENST00000539839 3282 ntBASIC14.62□□□□□ -0.07
COL8A1P27658 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
COL8A1P27658 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL8A1P27658 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
COL8A1P27658 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC14.62□□□□□ -0.07
COL8A1P27658 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.62□□□□□ -0.07
COL8A1P27658 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
COL8A1P27658 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 AC087499.5-201ENST00000452760 1342 ntBASIC14.62□□□□□ -0.07
COL8A1P27658 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
COL8A1P27658 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
COL8A1P27658 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC14.61□□□□□ -0.07
COL8A1P27658 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC14.61□□□□□ -0.07
COL8A1P27658 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.61□□□□□ -0.07
COL8A1P27658 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 WIZP1-201ENST00000531444 2299 ntBASIC14.61□□□□□ -0.07
COL8A1P27658 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
COL8A1P27658 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
COL8A1P27658 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.61□□□□□ -0.07
COL8A1P27658 AC087499.6-201ENST00000411576 835 ntBASIC14.61□□□□□ -0.07
COL8A1P27658 HCG4-201ENST00000418983 998 ntBASIC14.61□□□□□ -0.07
COL8A1P27658 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.61□□□□□ -0.07
COL8A1P27658 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
COL8A1P27658 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.61□□□□□ -0.07
COL8A1P27658 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.61□□□□□ -0.07
COL8A1P27658 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.61□□□□□ -0.07
COL8A1P27658 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.61□□□□□ -0.07
COL8A1P27658 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC14.61□□□□□ -0.07
COL8A1P27658 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 RETN-203ENST00000629642 400 ntTSL 5 BASIC14.61□□□□□ -0.07
COL8A1P27658 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC14.61□□□□□ -0.07
COL8A1P27658 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC14.61□□□□□ -0.07
COL8A1P27658 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC14.61□□□□□ -0.07
COL8A1P27658 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
COL8A1P27658 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
COL8A1P27658 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
COL8A1P27658 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC14.61□□□□□ -0.07
COL8A1P27658 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC14.61□□□□□ -0.07
COL8A1P27658 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
COL8A1P27658 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL8A1P27658 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC14.6□□□□□ -0.07
COL8A1P27658 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC14.6□□□□□ -0.07
COL8A1P27658 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC14.6□□□□□ -0.07
COL8A1P27658 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 AC092933.1-201ENST00000393644 945 ntBASIC14.6□□□□□ -0.07
COL8A1P27658 RPL37AP1-201ENST00000412502 279 ntBASIC14.6□□□□□ -0.07
COL8A1P27658 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC14.6□□□□□ -0.07
COL8A1P27658 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL8A1P27658 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 AC234783.1-201ENST00000441761 496 ntBASIC14.6□□□□□ -0.07
COL8A1P27658 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14.6□□□□□ -0.07
COL8A1P27658 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms