Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SDC3O75056 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.38■□□□□ 0.21
SDC3O75056 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.38■□□□□ 0.21
SDC3O75056 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC16.38■□□□□ 0.21
SDC3O75056 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.38■□□□□ 0.21
SDC3O75056 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.38■□□□□ 0.21
SDC3O75056 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.38■□□□□ 0.21
SDC3O75056 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.38■□□□□ 0.21
SDC3O75056 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.38■□□□□ 0.21
SDC3O75056 AL512638.1-201ENST00000457493 794 ntBASIC16.38■□□□□ 0.21
SDC3O75056 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.38■□□□□ 0.21
SDC3O75056 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.38■□□□□ 0.21
SDC3O75056 TERF1P3-201ENST00000505638 1227 ntBASIC16.38■□□□□ 0.21
SDC3O75056 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.38■□□□□ 0.21
SDC3O75056 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.38■□□□□ 0.21
SDC3O75056 MIR4453-201ENST00000584019 89 ntBASIC16.38■□□□□ 0.21
SDC3O75056 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.38■□□□□ 0.21
SDC3O75056 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.38■□□□□ 0.21
SDC3O75056 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.38■□□□□ 0.21
SDC3O75056 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SDC3O75056 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.38■□□□□ 0.21
SDC3O75056 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.38■□□□□ 0.21
SDC3O75056 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.38■□□□□ 0.21
SDC3O75056 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SDC3O75056 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.38■□□□□ 0.21
SDC3O75056 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SDC3O75056 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SDC3O75056 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
SDC3O75056 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.37■□□□□ 0.21
SDC3O75056 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.37■□□□□ 0.21
SDC3O75056 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.37■□□□□ 0.21
SDC3O75056 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.37■□□□□ 0.21
SDC3O75056 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.37■□□□□ 0.21
SDC3O75056 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.37■□□□□ 0.21
SDC3O75056 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.37■□□□□ 0.21
SDC3O75056 AC097493.3-201ENST00000509725 367 ntBASIC16.37■□□□□ 0.21
SDC3O75056 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.37■□□□□ 0.21
SDC3O75056 AC190387.1-201ENST00000551683 408 ntBASIC16.37■□□□□ 0.21
SDC3O75056 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.37■□□□□ 0.21
SDC3O75056 CYP2A7P1-201ENST00000595391 815 ntBASIC16.37■□□□□ 0.21
SDC3O75056 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 AL021920.2-201ENST00000624828 1351 ntBASIC16.37■□□□□ 0.21
SDC3O75056 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
SDC3O75056 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SDC3O75056 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SDC3O75056 KRT8P49-201ENST00000604166 1432 ntBASIC16.36■□□□□ 0.21
SDC3O75056 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.36■□□□□ 0.21
SDC3O75056 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.36■□□□□ 0.21
SDC3O75056 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
SDC3O75056 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
SDC3O75056 AC139713.2-201ENST00000641328 2723 ntBASIC16.36■□□□□ 0.21
SDC3O75056 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.36■□□□□ 0.21
SDC3O75056 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
SDC3O75056 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.36■□□□□ 0.21
SDC3O75056 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.36■□□□□ 0.21
SDC3O75056 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SDC3O75056 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.36■□□□□ 0.21
SDC3O75056 AC015922.1-201ENST00000421102 1152 ntBASIC16.36■□□□□ 0.21
SDC3O75056 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.36■□□□□ 0.21
SDC3O75056 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
SDC3O75056 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
SDC3O75056 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
SDC3O75056 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SDC3O75056 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
SDC3O75056 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms