Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
HMGB3O15347 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HMGB3O15347 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
HMGB3O15347 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC13.57□□□□□ -0.24
HMGB3O15347 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.57□□□□□ -0.24
HMGB3O15347 KRT8P9-201ENST00000558927 1449 ntBASIC13.57□□□□□ -0.24
HMGB3O15347 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.57□□□□□ -0.24
HMGB3O15347 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
HMGB3O15347 AL356309.3-201ENST00000624132 1934 ntBASIC13.57□□□□□ -0.24
HMGB3O15347 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HMGB3O15347 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HMGB3O15347 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
HMGB3O15347 SLC25A1P2-201ENST00000430693 912 ntBASIC13.57□□□□□ -0.24
HMGB3O15347 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
HMGB3O15347 BX088651.1-201ENST00000540551 451 ntBASIC13.57□□□□□ -0.24
HMGB3O15347 DECR2-212ENST00000627716 352 ntTSL 2 BASIC13.57□□□□□ -0.24
HMGB3O15347 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
HMGB3O15347 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
HMGB3O15347 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 ASXL1-201ENST00000306058 6591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC13.57□□□□□ -0.24
HMGB3O15347 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.57□□□□□ -0.24
HMGB3O15347 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC13.57□□□□□ -0.24
HMGB3O15347 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
HMGB3O15347 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC13.57□□□□□ -0.24
HMGB3O15347 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC13.57□□□□□ -0.24
HMGB3O15347 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC13.57□□□□□ -0.24
HMGB3O15347 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HMGB3O15347 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
HMGB3O15347 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC13.56□□□□□ -0.24
HMGB3O15347 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC13.56□□□□□ -0.24
HMGB3O15347 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC13.56□□□□□ -0.24
HMGB3O15347 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC13.56□□□□□ -0.24
HMGB3O15347 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
HMGB3O15347 PRR31-201ENST00000371629 978 ntTSL 2 BASIC13.56□□□□□ -0.24
HMGB3O15347 PHB2-202ENST00000440277 996 ntTSL 5 BASIC13.56□□□□□ -0.24
HMGB3O15347 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC13.56□□□□□ -0.24
HMGB3O15347 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC13.56□□□□□ -0.24
HMGB3O15347 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC13.56□□□□□ -0.24
HMGB3O15347 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC13.56□□□□□ -0.24
HMGB3O15347 CFAP65-208ENST00000453220 5877 ntAPPRIS P4 TSL 5 BASIC13.56□□□□□ -0.24
HMGB3O15347 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC13.56□□□□□ -0.24
HMGB3O15347 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.56□□□□□ -0.24
HMGB3O15347 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC13.56□□□□□ -0.24
HMGB3O15347 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 PLEKHG2-203ENST00000425673 8132 ntAPPRIS P2 TSL 2 BASIC13.56□□□□□ -0.24
HMGB3O15347 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC13.56□□□□□ -0.24
HMGB3O15347 ADAMTS7P1-201ENST00000613213 4793 ntBASIC13.56□□□□□ -0.24
HMGB3O15347 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
HMGB3O15347 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HMGB3O15347 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC13.55□□□□□ -0.24
HMGB3O15347 TG-201ENST00000220616 8450 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC13.55□□□□□ -0.24
HMGB3O15347 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HMGB3O15347 AMT-250ENST00000637682 1823 ntTSL 5 BASIC13.55□□□□□ -0.24
HMGB3O15347 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms