Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
PTCHD1Q96NR3 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 AC074386.1-202ENST00000463561 864 ntBASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 PDPK2P-202ENST00000562415 1191 ntBASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 MIR4515-201ENST00000584082 81 ntBASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 AC023511.2-201ENST00000618803 211 ntBASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
PTCHD1Q96NR3 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 YBX2P1-201ENST00000394192 760 ntBASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 KRT18P13-201ENST00000400056 1290 ntBASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 DNAJB3-201ENST00000446806 729 ntBASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 AL031432.2-201ENST00000566714 459 ntBASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 AL928711.1-201ENST00000570165 459 ntBASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 AC091167.2-201ENST00000579581 588 ntBASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 AL645728.2-201ENST00000641974 660 ntBASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 AC106886.4-201ENST00000623557 2502 ntBASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 AC012569.1-201ENST00000591191 1524 ntBASIC15.84■□□□□ 0.13
PTCHD1Q96NR3 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PTCHD1Q96NR3 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PTCHD1Q96NR3 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
PTCHD1Q96NR3 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.83■□□□□ 0.13
PTCHD1Q96NR3 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
PTCHD1Q96NR3 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
PTCHD1Q96NR3 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms