Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 CXCL1P1-201ENST00000502804 216 ntBASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 RNA5SP421-201ENST00000516864 134 ntBASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC19.21■□□□□ 0.67
SH3RF1Q7Z6J0 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 AC236430.1-201ENST00000402231 743 ntBASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SH3RF1Q7Z6J0 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 MIR661-201ENST00000384842 89 ntBASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 PMS2P4-201ENST00000412466 1052 ntBASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 LINC00982-205ENST00000420957 435 ntBASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 ADH5P3-201ENST00000433842 1137 ntBASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 INGX-202ENST00000489074 768 ntBASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 AC092171.3-201ENST00000610122 2651 ntBASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 PCDHB19P-201ENST00000570871 2371 ntBASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.19■□□□□ 0.66
SH3RF1Q7Z6J0 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms