Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.24■□□□□ 0.19
HMGCS1Q01581 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
HMGCS1Q01581 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 AC006538.1-201ENST00000567905 1585 ntBASIC16.23■□□□□ 0.19
HMGCS1Q01581 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 REXO1L6P-202ENST00000619970 1078 ntBASIC16.23■□□□□ 0.19
HMGCS1Q01581 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
HMGCS1Q01581 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HMGCS1Q01581 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 PAWRP1-201ENST00000451083 565 ntBASIC16.22■□□□□ 0.19
HMGCS1Q01581 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 AC004706.3-202ENST00000621574 984 ntBASIC16.22■□□□□ 0.19
HMGCS1Q01581 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.22■□□□□ 0.19
HMGCS1Q01581 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
HMGCS1Q01581 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.21■□□□□ 0.19
HMGCS1Q01581 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HMGCS1Q01581 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms