Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC21.8■■□□□ 1.08
COL18A1P39060 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
COL18A1P39060 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
COL18A1P39060 AC093726.1-201ENST00000608064 963 ntBASIC21.8■■□□□ 1.08
COL18A1P39060 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC21.8■■□□□ 1.08
COL18A1P39060 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
COL18A1P39060 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
COL18A1P39060 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL18A1P39060 AC092068.3-201ENST00000587894 2016 ntBASIC21.79■■□□□ 1.08
COL18A1P39060 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC21.79■■□□□ 1.08
COL18A1P39060 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC21.79■■□□□ 1.08
COL18A1P39060 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC21.79■■□□□ 1.08
COL18A1P39060 HIST1H2BPS3-201ENST00000419683 341 ntBASIC21.79■■□□□ 1.08
COL18A1P39060 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC21.79■■□□□ 1.08
COL18A1P39060 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC21.79■■□□□ 1.08
COL18A1P39060 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC21.79■■□□□ 1.08
COL18A1P39060 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC21.79■■□□□ 1.08
COL18A1P39060 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC21.79■■□□□ 1.08
COL18A1P39060 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC21.79■■□□□ 1.08
COL18A1P39060 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC21.79■■□□□ 1.08
COL18A1P39060 AL031731.1-201ENST00000642131 2094 ntBASIC21.79■■□□□ 1.08
COL18A1P39060 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC21.79■■□□□ 1.08
COL18A1P39060 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
COL18A1P39060 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC21.79■■□□□ 1.08
COL18A1P39060 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 AL390961.4-201ENST00000623958 2535 ntBASIC21.79■■□□□ 1.08
COL18A1P39060 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
COL18A1P39060 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.79■■□□□ 1.08
COL18A1P39060 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 HIST3H2BA-201ENST00000436555 524 ntBASIC21.79■■□□□ 1.08
COL18A1P39060 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC21.79■■□□□ 1.08
COL18A1P39060 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC21.79■■□□□ 1.08
COL18A1P39060 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL18A1P39060 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL18A1P39060 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC21.78■■□□□ 1.08
COL18A1P39060 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL18A1P39060 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
COL18A1P39060 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL18A1P39060 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL18A1P39060 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL18A1P39060 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC21.78■■□□□ 1.08
COL18A1P39060 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL18A1P39060 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC21.78■■□□□ 1.08
COL18A1P39060 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.78■■□□□ 1.08
COL18A1P39060 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL18A1P39060 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
COL18A1P39060 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC21.78■■□□□ 1.08
COL18A1P39060 MIR6799-201ENST00000620297 69 ntBASIC21.78■■□□□ 1.08
COL18A1P39060 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC21.78■■□□□ 1.08
COL18A1P39060 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
COL18A1P39060 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
COL18A1P39060 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL18A1P39060 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.78■■□□□ 1.08
COL18A1P39060 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.78■■□□□ 1.08
COL18A1P39060 GPAA1P2-202ENST00000606848 1787 ntBASIC21.77■■□□□ 1.08
COL18A1P39060 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL18A1P39060 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC21.77■■□□□ 1.08
COL18A1P39060 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL18A1P39060 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL18A1P39060 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC21.77■■□□□ 1.08
COL18A1P39060 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC21.77■■□□□ 1.08
COL18A1P39060 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC21.77■■□□□ 1.08
COL18A1P39060 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL18A1P39060 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
COL18A1P39060 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL18A1P39060 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL18A1P39060 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL18A1P39060 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL18A1P39060 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL18A1P39060 FAM86MP-201ENST00000340703 885 ntBASIC21.76■■□□□ 1.07
COL18A1P39060 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC21.76■■□□□ 1.07
COL18A1P39060 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COL18A1P39060 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC21.76■■□□□ 1.07
COL18A1P39060 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC21.76■■□□□ 1.07
COL18A1P39060 AC092658.1-201ENST00000505836 891 ntBASIC21.76■■□□□ 1.07
COL18A1P39060 SDHAP3-202ENST00000515467 728 ntBASIC21.76■■□□□ 1.07
COL18A1P39060 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL18A1P39060 MIR6775-201ENST00000617557 69 ntBASIC21.76■■□□□ 1.07
COL18A1P39060 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC21.76■■□□□ 1.07
COL18A1P39060 COX11-210ENST00000639671 696 ntBASIC21.76■■□□□ 1.07
COL18A1P39060 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL18A1P39060 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL18A1P39060 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC21.76■■□□□ 1.07
COL18A1P39060 RELA-227ENST00000615805 2236 ntTSL 5 BASIC21.76■■□□□ 1.07
COL18A1P39060 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms