Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.21■□□□□ 0.35
SLC6A4P31645 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SLC6A4P31645 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SLC6A4P31645 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SLC6A4P31645 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SLC6A4P31645 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SLC6A4P31645 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SLC6A4P31645 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
SLC6A4P31645 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.34
SLC6A4P31645 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.2■□□□□ 0.34
SLC6A4P31645 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.2■□□□□ 0.34
SLC6A4P31645 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SLC6A4P31645 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SLC6A4P31645 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.2■□□□□ 0.34
SLC6A4P31645 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
SLC6A4P31645 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.2■□□□□ 0.34
SLC6A4P31645 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
SLC6A4P31645 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.2■□□□□ 0.34
SLC6A4P31645 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC17.2■□□□□ 0.34
SLC6A4P31645 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC17.2■□□□□ 0.34
SLC6A4P31645 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.2■□□□□ 0.34
SLC6A4P31645 FAM86C2P-203ENST00000528684 1004 ntBASIC17.2■□□□□ 0.34
SLC6A4P31645 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.2■□□□□ 0.34
SLC6A4P31645 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.2■□□□□ 0.34
SLC6A4P31645 AC093520.2-201ENST00000561830 333 ntBASIC17.2■□□□□ 0.34
SLC6A4P31645 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.2■□□□□ 0.34
SLC6A4P31645 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 AL603756.1-201ENST00000606511 2163 ntBASIC17.2■□□□□ 0.34
SLC6A4P31645 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 WASH6P-202ENST00000359512 1437 ntBASIC17.2■□□□□ 0.34
SLC6A4P31645 KRT8P39-201ENST00000396270 1433 ntBASIC17.2■□□□□ 0.34
SLC6A4P31645 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
SLC6A4P31645 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.2■□□□□ 0.34
SLC6A4P31645 AKAP8P1-201ENST00000434743 1349 ntBASIC17.2■□□□□ 0.34
SLC6A4P31645 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SLC6A4P31645 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.2■□□□□ 0.34
SLC6A4P31645 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.19■□□□□ 0.34
SLC6A4P31645 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
SLC6A4P31645 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.19■□□□□ 0.34
SLC6A4P31645 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.19■□□□□ 0.34
SLC6A4P31645 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.19■□□□□ 0.34
SLC6A4P31645 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SLC6A4P31645 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SLC6A4P31645 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.19■□□□□ 0.34
SLC6A4P31645 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SLC6A4P31645 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.19■□□□□ 0.34
SLC6A4P31645 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.19■□□□□ 0.34
SLC6A4P31645 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.19■□□□□ 0.34
SLC6A4P31645 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC17.19■□□□□ 0.34
SLC6A4P31645 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SLC6A4P31645 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.19■□□□□ 0.34
SLC6A4P31645 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 AC004835.2-201ENST00000603762 682 ntBASIC17.19■□□□□ 0.34
SLC6A4P31645 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.19■□□□□ 0.34
SLC6A4P31645 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SLC6A4P31645 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SLC6A4P31645 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.19■□□□□ 0.34
SLC6A4P31645 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
SLC6A4P31645 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SLC6A4P31645 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.18■□□□□ 0.34
SLC6A4P31645 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.18■□□□□ 0.34
SLC6A4P31645 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.18■□□□□ 0.34
SLC6A4P31645 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.18■□□□□ 0.34
SLC6A4P31645 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SLC6A4P31645 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SLC6A4P31645 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SLC6A4P31645 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SLC6A4P31645 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SLC6A4P31645 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms