Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXC4P09017 AC098859.1-201ENST00000502915 1238 ntBASIC16.3■□□□□ 0.2
HOXC4P09017 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC4P09017 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.3■□□□□ 0.2
HOXC4P09017 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.3■□□□□ 0.2
HOXC4P09017 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXC4P09017 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC4P09017 SPTSSB-204ENST00000617024 1292 ntBASIC16.3■□□□□ 0.2
HOXC4P09017 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXC4P09017 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC4P09017 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HOXC4P09017 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.3■□□□□ 0.2
HOXC4P09017 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC4P09017 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
HOXC4P09017 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.3■□□□□ 0.2
HOXC4P09017 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC4P09017 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HOXC4P09017 FOXO1B-201ENST00000504678 1527 ntBASIC16.29■□□□□ 0.2
HOXC4P09017 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HOXC4P09017 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC4P09017 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 FAM220BP-201ENST00000377689 816 ntBASIC16.29■□□□□ 0.2
HOXC4P09017 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.29■□□□□ 0.2
HOXC4P09017 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.29■□□□□ 0.2
HOXC4P09017 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXC4P09017 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXC4P09017 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.29■□□□□ 0.2
HOXC4P09017 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.29■□□□□ 0.2
HOXC4P09017 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC4P09017 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC4P09017 AC093512.1-201ENST00000617969 520 ntBASIC16.29■□□□□ 0.2
HOXC4P09017 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXC4P09017 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXC4P09017 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC4P09017 AP3S2-216ENST00000617003 1561 ntBASIC16.29■□□□□ 0.2
HOXC4P09017 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
HOXC4P09017 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.29■□□□□ 0.2
HOXC4P09017 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
HOXC4P09017 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.29■□□□□ 0.2
HOXC4P09017 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.29■□□□□ 0.2
HOXC4P09017 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HOXC4P09017 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC4P09017 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC4P09017 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXC4P09017 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC4P09017 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXC4P09017 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
HOXC4P09017 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXC4P09017 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXC4P09017 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.28■□□□□ 0.2
HOXC4P09017 KLF2P3-201ENST00000451977 1087 ntBASIC16.28■□□□□ 0.2
HOXC4P09017 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.28■□□□□ 0.2
HOXC4P09017 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.28■□□□□ 0.2
HOXC4P09017 RARRES2P9-201ENST00000565168 469 ntBASIC16.28■□□□□ 0.2
HOXC4P09017 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXC4P09017 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HOXC4P09017 AC008677.1-201ENST00000519230 1561 ntBASIC16.28■□□□□ 0.2
HOXC4P09017 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.28■□□□□ 0.2
HOXC4P09017 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 GPAA1P2-202ENST00000606848 1787 ntBASIC16.28■□□□□ 0.2
HOXC4P09017 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HOXC4P09017 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC4P09017 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC4P09017 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC4P09017 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC4P09017 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.2
HOXC4P09017 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
HOXC4P09017 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.27■□□□□ 0.2
HOXC4P09017 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HOXC4P09017 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms