Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.8■□□□□ 0.28
LDB2O43679 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.8■□□□□ 0.28
LDB2O43679 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.8■□□□□ 0.28
LDB2O43679 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.8■□□□□ 0.28
LDB2O43679 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB2O43679 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.8■□□□□ 0.28
LDB2O43679 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.8■□□□□ 0.28
LDB2O43679 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
LDB2O43679 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDB2O43679 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
LDB2O43679 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LDB2O43679 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
LDB2O43679 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
LDB2O43679 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB2O43679 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
LDB2O43679 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.79■□□□□ 0.28
LDB2O43679 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.79■□□□□ 0.28
LDB2O43679 IL9RP2-201ENST00000423948 1312 ntBASIC16.79■□□□□ 0.28
LDB2O43679 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 ALOX12P2-203ENST00000570921 1945 ntBASIC16.79■□□□□ 0.28
LDB2O43679 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB2O43679 CRYGEP-201ENST00000412192 528 ntBASIC16.79■□□□□ 0.28
LDB2O43679 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.79■□□□□ 0.28
LDB2O43679 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB2O43679 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB2O43679 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB2O43679 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.79■□□□□ 0.28
LDB2O43679 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.79■□□□□ 0.28
LDB2O43679 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC16.79■□□□□ 0.28
LDB2O43679 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.79■□□□□ 0.28
LDB2O43679 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.79■□□□□ 0.28
LDB2O43679 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.79■□□□□ 0.28
LDB2O43679 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB2O43679 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB2O43679 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.79■□□□□ 0.28
LDB2O43679 AC104109.2-201ENST00000602919 1418 ntBASIC16.79■□□□□ 0.28
LDB2O43679 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.78■□□□□ 0.28
LDB2O43679 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
LDB2O43679 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.78■□□□□ 0.28
LDB2O43679 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
LDB2O43679 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 AL590627.1-203ENST00000421194 1026 ntBASIC16.78■□□□□ 0.28
LDB2O43679 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.78■□□□□ 0.28
LDB2O43679 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.78■□□□□ 0.28
LDB2O43679 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.78■□□□□ 0.28
LDB2O43679 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 AP001350.2-201ENST00000625104 1094 ntBASIC16.78■□□□□ 0.28
LDB2O43679 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.78■□□□□ 0.28
LDB2O43679 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LDB2O43679 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
LDB2O43679 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.78■□□□□ 0.28
LDB2O43679 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDB2O43679 AL031731.1-201ENST00000642131 2094 ntBASIC16.77■□□□□ 0.28
LDB2O43679 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LDB2O43679 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
LDB2O43679 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.77■□□□□ 0.28
LDB2O43679 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LDB2O43679 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LDB2O43679 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
LDB2O43679 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.77■□□□□ 0.28
LDB2O43679 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.77■□□□□ 0.28
LDB2O43679 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms