Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AP003419.4-201ENST00000616071 517 ntBASIC28.27■■■□□ 2.12
CUX2O14529 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
CUX2O14529 AC138627.1-207ENST00000641560 1006 ntBASIC28.27■■■□□ 2.12
CUX2O14529 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC28.27■■■□□ 2.12
CUX2O14529 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CUX2O14529 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CUX2O14529 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
CUX2O14529 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC28.27■■■□□ 2.12
CUX2O14529 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CUX2O14529 AC138028.4-201ENST00000564984 1845 ntBASIC28.27■■■□□ 2.12
CUX2O14529 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
CUX2O14529 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CUX2O14529 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CUX2O14529 TPO-206ENST00000382269 1155 ntTSL 5 BASIC28.27■■■□□ 2.12
CUX2O14529 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC28.27■■■□□ 2.12
CUX2O14529 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC28.27■■■□□ 2.12
CUX2O14529 AC021097.1-201ENST00000607902 574 ntBASIC28.27■■■□□ 2.12
CUX2O14529 PRKN-211ENST00000615065 261 ntTSL 5 BASIC28.27■■■□□ 2.12
CUX2O14529 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC28.27■■■□□ 2.12
CUX2O14529 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.12
CUX2O14529 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC28.26■■■□□ 2.12
CUX2O14529 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
CUX2O14529 KRT8P12-202ENST00000472924 1397 ntBASIC28.26■■■□□ 2.11
CUX2O14529 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC28.26■■■□□ 2.11
CUX2O14529 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC28.26■■■□□ 2.11
CUX2O14529 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CUX2O14529 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
CUX2O14529 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CUX2O14529 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CUX2O14529 ZBTB12BP-201ENST00000314232 1122 ntBASIC28.26■■■□□ 2.11
CUX2O14529 REEP1-202ENST00000453231 940 ntTSL 2 BASIC28.26■■■□□ 2.11
CUX2O14529 BX284668.4-201ENST00000453917 508 ntBASIC28.26■■■□□ 2.11
CUX2O14529 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
CUX2O14529 SUOX-214ENST00000551841 906 ntTSL 3 BASIC28.26■■■□□ 2.11
CUX2O14529 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC28.26■■■□□ 2.11
CUX2O14529 AC025048.3-201ENST00000590609 569 ntBASIC28.26■■■□□ 2.11
CUX2O14529 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC28.26■■■□□ 2.11
CUX2O14529 GRN-222ENST00000639447 1314 ntTSL 2 BASIC28.26■■■□□ 2.11
CUX2O14529 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CUX2O14529 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC28.25■■■□□ 2.11
CUX2O14529 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC28.25■■■□□ 2.11
CUX2O14529 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CUX2O14529 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
CUX2O14529 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
CUX2O14529 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC28.25■■■□□ 2.11
CUX2O14529 MIR326-201ENST00000362220 95 ntBASIC28.25■■■□□ 2.11
CUX2O14529 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
CUX2O14529 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CUX2O14529 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC28.25■■■□□ 2.11
CUX2O14529 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
CUX2O14529 AC005077.2-201ENST00000449786 690 ntBASIC28.25■■■□□ 2.11
CUX2O14529 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC28.25■■■□□ 2.11
CUX2O14529 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
CUX2O14529 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CUX2O14529 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
CUX2O14529 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC28.25■■■□□ 2.11
CUX2O14529 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
CUX2O14529 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
CUX2O14529 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
CUX2O14529 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
CUX2O14529 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC28.24■■■□□ 2.11
CUX2O14529 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CUX2O14529 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC28.24■■■□□ 2.11
CUX2O14529 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CUX2O14529 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
CUX2O14529 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CUX2O14529 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC28.24■■■□□ 2.11
CUX2O14529 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC28.24■■■□□ 2.11
CUX2O14529 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC28.24■■■□□ 2.11
CUX2O14529 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC28.24■■■□□ 2.11
CUX2O14529 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CUX2O14529 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CUX2O14529 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CUX2O14529 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC28.24■■■□□ 2.11
CUX2O14529 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CUX2O14529 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
CUX2O14529 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
CUX2O14529 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
CUX2O14529 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CUX2O14529 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
CUX2O14529 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
CUX2O14529 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC28.23■■■□□ 2.11
CUX2O14529 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CUX2O14529 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
CUX2O14529 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
CUX2O14529 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC28.23■■■□□ 2.11
CUX2O14529 TDH-203ENST00000531764 1110 ntBASIC28.23■■■□□ 2.11
CUX2O14529 RARRES2P5-201ENST00000564013 466 ntBASIC28.23■■■□□ 2.11
CUX2O14529 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC28.23■■■□□ 2.11
CUX2O14529 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC28.23■■■□□ 2.11
CUX2O14529 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
CUX2O14529 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC28.23■■■□□ 2.11
CUX2O14529 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC28.23■■■□□ 2.11
CUX2O14529 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
CUX2O14529 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
CUX2O14529 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC28.23■■■□□ 2.11
CUX2O14529 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
CUX2O14529 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
CUX2O14529 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CUX2O14529 AC008267.1-201ENST00000474858 1069 ntBASIC28.22■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms