Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 MAX-210ENST00000555419 765 ntTSL 5 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC12.84□□□□□ -0.35
COL6A5A8TX70 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 AP001350.2-201ENST00000625104 1094 ntBASIC12.84□□□□□ -0.35
COL6A5A8TX70 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
COL6A5A8TX70 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
COL6A5A8TX70 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
COL6A5A8TX70 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC12.83□□□□□ -0.35
COL6A5A8TX70 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC12.83□□□□□ -0.35
COL6A5A8TX70 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC12.83□□□□□ -0.35
COL6A5A8TX70 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC12.83□□□□□ -0.35
COL6A5A8TX70 AC135776.1-201ENST00000319817 2481 ntBASIC12.83□□□□□ -0.35
COL6A5A8TX70 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 ACTG1P3-201ENST00000431775 1114 ntBASIC12.83□□□□□ -0.36
COL6A5A8TX70 PTPA-217ENST00000434095 870 ntTSL 2 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 HIST2H2BC-201ENST00000498492 580 ntBASIC12.83□□□□□ -0.36
COL6A5A8TX70 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 AL391069.4-201ENST00000609583 481 ntBASIC12.83□□□□□ -0.36
COL6A5A8TX70 SLC9A3P2-201ENST00000447821 2021 ntBASIC12.83□□□□□ -0.36
COL6A5A8TX70 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 AC073592.3-201ENST00000625118 1834 ntBASIC12.83□□□□□ -0.36
COL6A5A8TX70 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 AC005332.7-201ENST00000614046 2005 ntBASIC12.83□□□□□ -0.36
COL6A5A8TX70 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 AL627389.1-201ENST00000413508 1182 ntBASIC12.83□□□□□ -0.36
COL6A5A8TX70 RN7SL399P-201ENST00000471648 279 ntBASIC12.83□□□□□ -0.36
COL6A5A8TX70 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
COL6A5A8TX70 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
COL6A5A8TX70 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 RAD18-204ENST00000418463 563 ntTSL 4 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 RAD18-205ENST00000421052 582 ntTSL 3 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 AL355864.2-201ENST00000447420 863 ntBASIC12.82□□□□□ -0.36
COL6A5A8TX70 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC12.82□□□□□ -0.36
COL6A5A8TX70 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
COL6A5A8TX70 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms