Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 AP3S2-216ENST00000617003 1561 ntBASIC17.06■□□□□ 0.32
CHFRQ96EP1 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.05■□□□□ 0.32
CHFRQ96EP1 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.05■□□□□ 0.32
CHFRQ96EP1 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.05■□□□□ 0.32
CHFRQ96EP1 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.05■□□□□ 0.32
CHFRQ96EP1 AP005018.1-201ENST00000525475 301 ntBASIC17.05■□□□□ 0.32
CHFRQ96EP1 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.05■□□□□ 0.32
CHFRQ96EP1 SPDYE12P-201ENST00000618416 771 ntBASIC17.05■□□□□ 0.32
CHFRQ96EP1 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CHFRQ96EP1 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CHFRQ96EP1 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
CHFRQ96EP1 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 AC108860.2-201ENST00000562760 2183 ntBASIC17.05■□□□□ 0.32
CHFRQ96EP1 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.05■□□□□ 0.32
CHFRQ96EP1 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CHFRQ96EP1 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 AC100757.3-201ENST00000622361 1406 ntBASIC17.04■□□□□ 0.32
CHFRQ96EP1 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 TDG-209ENST00000544861 1387 ntTSL 2 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 AC068880.1-201ENST00000507289 2297 ntBASIC17.04■□□□□ 0.32
CHFRQ96EP1 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.04■□□□□ 0.32
CHFRQ96EP1 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 AC241585.1-201ENST00000433527 519 ntBASIC17.04■□□□□ 0.32
CHFRQ96EP1 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 AC018529.1-201ENST00000613063 361 ntBASIC17.04■□□□□ 0.32
CHFRQ96EP1 AL590560.3-201ENST00000623350 461 ntBASIC17.04■□□□□ 0.32
CHFRQ96EP1 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CHFRQ96EP1 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
CHFRQ96EP1 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHFRQ96EP1 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.03■□□□□ 0.32
CHFRQ96EP1 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms