Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.16■□□□□ 0.66
ERCC4Q92889 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
ERCC4Q92889 AP000867.3-201ENST00000524675 377 ntBASIC19.16■□□□□ 0.66
ERCC4Q92889 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.16■□□□□ 0.66
ERCC4Q92889 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.16■□□□□ 0.66
ERCC4Q92889 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.16■□□□□ 0.66
ERCC4Q92889 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
ERCC4Q92889 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.16■□□□□ 0.66
ERCC4Q92889 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.16■□□□□ 0.66
ERCC4Q92889 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.16■□□□□ 0.66
ERCC4Q92889 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.16■□□□□ 0.66
ERCC4Q92889 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.16■□□□□ 0.66
ERCC4Q92889 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
ERCC4Q92889 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
ERCC4Q92889 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC19.16■□□□□ 0.66
ERCC4Q92889 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC19.16■□□□□ 0.66
ERCC4Q92889 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
ERCC4Q92889 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ERCC4Q92889 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ERCC4Q92889 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ERCC4Q92889 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
ERCC4Q92889 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
ERCC4Q92889 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC19.15■□□□□ 0.66
ERCC4Q92889 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 ARMC10P1-201ENST00000313754 855 ntBASIC19.15■□□□□ 0.66
ERCC4Q92889 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
ERCC4Q92889 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
ERCC4Q92889 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 SPDYE21P-201ENST00000413323 827 ntBASIC19.15■□□□□ 0.66
ERCC4Q92889 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
ERCC4Q92889 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.15■□□□□ 0.66
ERCC4Q92889 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.15■□□□□ 0.66
ERCC4Q92889 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.15■□□□□ 0.66
ERCC4Q92889 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.15■□□□□ 0.66
ERCC4Q92889 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
ERCC4Q92889 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.15■□□□□ 0.66
ERCC4Q92889 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
ERCC4Q92889 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC19.15■□□□□ 0.66
ERCC4Q92889 OVCH1-AS1-204ENST00000641955 5529 ntBASIC19.15■□□□□ 0.66
ERCC4Q92889 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC19.15■□□□□ 0.66
ERCC4Q92889 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
ERCC4Q92889 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ERCC4Q92889 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.14■□□□□ 0.66
ERCC4Q92889 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
ERCC4Q92889 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC19.14■□□□□ 0.66
ERCC4Q92889 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
ERCC4Q92889 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
ERCC4Q92889 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.66
ERCC4Q92889 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
ERCC4Q92889 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
ERCC4Q92889 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
ERCC4Q92889 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
ERCC4Q92889 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
ERCC4Q92889 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
ERCC4Q92889 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC19.14■□□□□ 0.65
ERCC4Q92889 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
ERCC4Q92889 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ERCC4Q92889 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.14■□□□□ 0.65
ERCC4Q92889 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ERCC4Q92889 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.14■□□□□ 0.65
ERCC4Q92889 AL020989.1-201ENST00000422979 469 ntBASIC19.14■□□□□ 0.65
ERCC4Q92889 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.14■□□□□ 0.65
ERCC4Q92889 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.14■□□□□ 0.65
ERCC4Q92889 AC114341.1-201ENST00000618070 349 ntBASIC19.14■□□□□ 0.65
ERCC4Q92889 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
ERCC4Q92889 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ERCC4Q92889 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
ERCC4Q92889 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
ERCC4Q92889 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
ERCC4Q92889 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.14■□□□□ 0.65
ERCC4Q92889 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ERCC4Q92889 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ERCC4Q92889 PC-204ENST00000524491 1714 ntTSL 2 BASIC19.14■□□□□ 0.65
ERCC4Q92889 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ERCC4Q92889 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.14■□□□□ 0.65
ERCC4Q92889 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ERCC4Q92889 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms