Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
LINC00643Q86TS7 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 AC006449.6-201ENST00000612330 2296 ntBASIC10.47□□□□□ -0.73
LINC00643Q86TS7 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 SERTAD2-201ENST00000313349 5549 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 SLC6A6P1-201ENST00000413933 1850 ntBASIC10.47□□□□□ -0.73
LINC00643Q86TS7 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 YBX1P4-201ENST00000392794 808 ntBASIC10.47□□□□□ -0.73
LINC00643Q86TS7 BX842568.3-201ENST00000418104 571 ntBASIC10.47□□□□□ -0.73
LINC00643Q86TS7 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 AC136621.1-201ENST00000624017 2304 ntBASIC10.47□□□□□ -0.73
LINC00643Q86TS7 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
LINC00643Q86TS7 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 HAL-202ENST00000538703 2637 ntTSL 2 BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 PEG13-201ENST00000631594 5667 ntBASIC10.46□□□□□ -0.73
LINC00643Q86TS7 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 TUBB8P6-201ENST00000436895 1288 ntBASIC10.46□□□□□ -0.73
LINC00643Q86TS7 DDX43P3-201ENST00000441064 443 ntBASIC10.46□□□□□ -0.73
LINC00643Q86TS7 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 KRT18P16-201ENST00000510337 1294 ntBASIC10.46□□□□□ -0.73
LINC00643Q86TS7 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 AC126544.1-201ENST00000580842 1059 ntBASIC10.46□□□□□ -0.73
LINC00643Q86TS7 AP001160.3-201ENST00000601484 763 ntBASIC10.46□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms