Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 AL355306.1-201ENST00000415580 579 ntBASIC16.61■□□□□ 0.25
SRP54P61011 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.61■□□□□ 0.25
SRP54P61011 ADH5P3-201ENST00000433842 1137 ntBASIC16.61■□□□□ 0.25
SRP54P61011 AC091167.2-201ENST00000579581 588 ntBASIC16.61■□□□□ 0.25
SRP54P61011 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 AC022145.2-201ENST00000598203 171 ntBASIC16.61■□□□□ 0.25
SRP54P61011 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.61■□□□□ 0.25
SRP54P61011 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.61■□□□□ 0.25
SRP54P61011 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
SRP54P61011 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SRP54P61011 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.61■□□□□ 0.25
SRP54P61011 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SRP54P61011 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.61■□□□□ 0.25
SRP54P61011 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
SRP54P61011 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.6■□□□□ 0.25
SRP54P61011 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.6■□□□□ 0.25
SRP54P61011 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SRP54P61011 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
SRP54P61011 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 TIMM8BP1-201ENST00000452384 211 ntBASIC16.6■□□□□ 0.25
SRP54P61011 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.6■□□□□ 0.25
SRP54P61011 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.6■□□□□ 0.25
SRP54P61011 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.6■□□□□ 0.25
SRP54P61011 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.6■□□□□ 0.25
SRP54P61011 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.6■□□□□ 0.25
SRP54P61011 DUX4L17-201ENST00000557360 1267 ntBASIC16.6■□□□□ 0.25
SRP54P61011 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.6■□□□□ 0.25
SRP54P61011 AC026120.1-201ENST00000611536 926 ntBASIC16.6■□□□□ 0.25
SRP54P61011 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SRP54P61011 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.6■□□□□ 0.25
SRP54P61011 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
SRP54P61011 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SRP54P61011 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.6■□□□□ 0.25
SRP54P61011 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 AL021920.2-201ENST00000624828 1351 ntBASIC16.6■□□□□ 0.25
SRP54P61011 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SRP54P61011 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.6■□□□□ 0.25
SRP54P61011 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SRP54P61011 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SRP54P61011 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SRP54P61011 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SRP54P61011 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SRP54P61011 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SRP54P61011 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SRP54P61011 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.59■□□□□ 0.25
SRP54P61011 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SRP54P61011 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SRP54P61011 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SRP54P61011 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SRP54P61011 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.59■□□□□ 0.25
SRP54P61011 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.59■□□□□ 0.25
SRP54P61011 SPDYE11-202ENST00000450699 704 ntBASIC16.59■□□□□ 0.25
SRP54P61011 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.59■□□□□ 0.25
SRP54P61011 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.59■□□□□ 0.25
SRP54P61011 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.59■□□□□ 0.25
SRP54P61011 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
SRP54P61011 SPDYE9P-201ENST00000570642 692 ntBASIC16.59■□□□□ 0.25
SRP54P61011 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SRP54P61011 SPDYE10P-202ENST00000612005 668 ntBASIC16.59■□□□□ 0.25
SRP54P61011 SPDYE8P-202ENST00000612377 668 ntBASIC16.59■□□□□ 0.25
SRP54P61011 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.59■□□□□ 0.25
SRP54P61011 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SRP54P61011 AL161645.1-201ENST00000622716 1255 ntBASIC16.59■□□□□ 0.25
SRP54P61011 MST1L-201ENST00000442552 2185 ntBASIC16.59■□□□□ 0.25
SRP54P61011 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
SRP54P61011 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
SRP54P61011 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
SRP54P61011 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SRP54P61011 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SRP54P61011 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SRP54P61011 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.59■□□□□ 0.25
SRP54P61011 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SRP54P61011 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
SRP54P61011 SLC22A20-204ENST00000530038 1673 ntBASIC16.59■□□□□ 0.25
SRP54P61011 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
SRP54P61011 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
SRP54P61011 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.25
SRP54P61011 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms