Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.98■□□□□ 0.31
PTPN4P29074 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.98■□□□□ 0.31
PTPN4P29074 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.98■□□□□ 0.31
PTPN4P29074 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.98■□□□□ 0.31
PTPN4P29074 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTPN4P29074 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PTPN4P29074 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
PTPN4P29074 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 AC023824.1-201ENST00000562945 2975 ntBASIC16.97■□□□□ 0.31
PTPN4P29074 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.97■□□□□ 0.31
PTPN4P29074 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 RCN1P2-201ENST00000398357 915 ntBASIC16.97■□□□□ 0.31
PTPN4P29074 AC132008.2-207ENST00000454517 770 ntBASIC16.97■□□□□ 0.31
PTPN4P29074 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.97■□□□□ 0.31
PTPN4P29074 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PTPN4P29074 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.97■□□□□ 0.31
PTPN4P29074 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.97■□□□□ 0.31
PTPN4P29074 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC16.97■□□□□ 0.31
PTPN4P29074 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.97■□□□□ 0.31
PTPN4P29074 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 AC009533.2-201ENST00000543664 586 ntBASIC16.97■□□□□ 0.31
PTPN4P29074 AP001005.1-201ENST00000571755 1248 ntBASIC16.97■□□□□ 0.31
PTPN4P29074 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.97■□□□□ 0.31
PTPN4P29074 AC005336.2-201ENST00000593183 939 ntBASIC16.97■□□□□ 0.31
PTPN4P29074 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 AC120114.3-201ENST00000611923 658 ntBASIC16.97■□□□□ 0.31
PTPN4P29074 BX640515.1-201ENST00000617215 977 ntBASIC16.97■□□□□ 0.31
PTPN4P29074 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.97■□□□□ 0.31
PTPN4P29074 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 TP73-AS1-210ENST00000637775 1455 ntBASIC16.97■□□□□ 0.31
PTPN4P29074 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.97■□□□□ 0.31
PTPN4P29074 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTPN4P29074 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.96■□□□□ 0.31
PTPN4P29074 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.96■□□□□ 0.31
PTPN4P29074 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
PTPN4P29074 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
PTPN4P29074 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
PTPN4P29074 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
PTPN4P29074 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
PTPN4P29074 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.96■□□□□ 0.31
PTPN4P29074 AL590627.1-203ENST00000421194 1026 ntBASIC16.96■□□□□ 0.31
PTPN4P29074 MTCL1P1-201ENST00000446207 792 ntBASIC16.96■□□□□ 0.31
PTPN4P29074 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.96■□□□□ 0.31
PTPN4P29074 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.96■□□□□ 0.31
PTPN4P29074 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.96■□□□□ 0.31
PTPN4P29074 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 AC008608.2-201ENST00000606089 416 ntBASIC16.96■□□□□ 0.31
PTPN4P29074 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.96■□□□□ 0.31
PTPN4P29074 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
PTPN4P29074 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
PTPN4P29074 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTPN4P29074 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
PTPN4P29074 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTPN4P29074 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTPN4P29074 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTPN4P29074 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.96■□□□□ 0.3
PTPN4P29074 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.95■□□□□ 0.3
PTPN4P29074 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.95■□□□□ 0.3
PTPN4P29074 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms