Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.41■□□□□ 0.54
COL6A1P12109 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A1P12109 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
COL6A1P12109 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 AL133338.1-201ENST00000565695 1517 ntBASIC18.41■□□□□ 0.54
COL6A1P12109 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.41■□□□□ 0.54
COL6A1P12109 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
COL6A1P12109 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC18.41■□□□□ 0.54
COL6A1P12109 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 RN7SL618P-201ENST00000477850 296 ntBASIC18.41■□□□□ 0.54
COL6A1P12109 FAM8A2P-201ENST00000528813 1142 ntBASIC18.41■□□□□ 0.54
COL6A1P12109 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A1P12109 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A1P12109 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 AC044860.1-202ENST00000559481 777 ntBASIC18.41■□□□□ 0.54
COL6A1P12109 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A1P12109 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.41■□□□□ 0.54
COL6A1P12109 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.41■□□□□ 0.54
COL6A1P12109 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.41■□□□□ 0.54
COL6A1P12109 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.41■□□□□ 0.54
COL6A1P12109 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A1P12109 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A1P12109 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.41■□□□□ 0.54
COL6A1P12109 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 AC135050.7-201ENST00000624508 2218 ntBASIC18.41■□□□□ 0.54
COL6A1P12109 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A1P12109 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL6A1P12109 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COL6A1P12109 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A1P12109 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL6A1P12109 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A1P12109 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COL6A1P12109 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
COL6A1P12109 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL6A1P12109 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A1P12109 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A1P12109 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
COL6A1P12109 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL6A1P12109 TMEM14DP-201ENST00000422205 345 ntBASIC18.4■□□□□ 0.54
COL6A1P12109 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC18.4■□□□□ 0.54
COL6A1P12109 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC18.4■□□□□ 0.54
COL6A1P12109 KRT223P-202ENST00000449164 1292 ntBASIC18.4■□□□□ 0.54
COL6A1P12109 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A1P12109 SNX29P1-201ENST00000548357 1007 ntBASIC18.4■□□□□ 0.54
COL6A1P12109 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A1P12109 MIR6775-201ENST00000617557 69 ntBASIC18.4■□□□□ 0.54
COL6A1P12109 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A1P12109 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A1P12109 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A1P12109 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A1P12109 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL6A1P12109 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A1P12109 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A1P12109 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A1P12109 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A1P12109 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A1P12109 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A1P12109 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL6A1P12109 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL6A1P12109 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
COL6A1P12109 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A1P12109 EGFEM1P-202ENST00000431685 1563 ntBASIC18.39■□□□□ 0.53
COL6A1P12109 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A1P12109 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.39■□□□□ 0.53
COL6A1P12109 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A1P12109 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A1P12109 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A1P12109 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
COL6A1P12109 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A1P12109 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A1P12109 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A1P12109 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC18.39■□□□□ 0.53
COL6A1P12109 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.39■□□□□ 0.53
COL6A1P12109 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
COL6A1P12109 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC18.39■□□□□ 0.53
COL6A1P12109 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A1P12109 ELK1P1-201ENST00000485699 580 ntBASIC18.39■□□□□ 0.53
COL6A1P12109 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A1P12109 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A1P12109 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC18.39■□□□□ 0.53
COL6A1P12109 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A1P12109 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL6A1P12109 ORC6-206ENST00000568364 888 ntTSL 5 BASIC18.39■□□□□ 0.53
COL6A1P12109 CTBP2P3-201ENST00000585629 1255 ntBASIC18.39■□□□□ 0.53
COL6A1P12109 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms