Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.02■□□□□ 0.16
PROM1O43490 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PROM1O43490 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PROM1O43490 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PROM1O43490 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
PROM1O43490 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.02■□□□□ 0.16
PROM1O43490 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PROM1O43490 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PROM1O43490 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
PROM1O43490 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
PROM1O43490 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PROM1O43490 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
PROM1O43490 AL645728.1-201ENST00000366221 2101 ntBASIC16.02■□□□□ 0.16
PROM1O43490 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.02■□□□□ 0.16
PROM1O43490 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PROM1O43490 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.02■□□□□ 0.16
PROM1O43490 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.02■□□□□ 0.16
PROM1O43490 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
PROM1O43490 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.02■□□□□ 0.16
PROM1O43490 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.02■□□□□ 0.16
PROM1O43490 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PROM1O43490 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.02■□□□□ 0.15
PROM1O43490 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.02■□□□□ 0.15
PROM1O43490 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PROM1O43490 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
PROM1O43490 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.02■□□□□ 0.15
PROM1O43490 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PROM1O43490 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.02■□□□□ 0.15
PROM1O43490 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.02■□□□□ 0.15
PROM1O43490 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
PROM1O43490 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PROM1O43490 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
PROM1O43490 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
PROM1O43490 AC078925.2-201ENST00000624013 1973 ntBASIC16.02■□□□□ 0.15
PROM1O43490 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PROM1O43490 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.02■□□□□ 0.15
PROM1O43490 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PROM1O43490 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
PROM1O43490 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
PROM1O43490 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.01■□□□□ 0.15
PROM1O43490 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.01■□□□□ 0.15
PROM1O43490 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.01■□□□□ 0.15
PROM1O43490 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.01■□□□□ 0.15
PROM1O43490 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.01■□□□□ 0.15
PROM1O43490 AC098831.1-202ENST00000438821 336 ntBASIC16.01■□□□□ 0.15
PROM1O43490 IGHV3-22-201ENST00000520721 359 ntBASIC16.01■□□□□ 0.15
PROM1O43490 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.01■□□□□ 0.15
PROM1O43490 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PROM1O43490 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.01■□□□□ 0.15
PROM1O43490 AC004790.2-201ENST00000623588 572 ntBASIC16.01■□□□□ 0.15
PROM1O43490 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
PROM1O43490 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.01■□□□□ 0.15
PROM1O43490 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.01■□□□□ 0.15
PROM1O43490 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PROM1O43490 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PROM1O43490 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.01■□□□□ 0.15
PROM1O43490 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.01■□□□□ 0.15
PROM1O43490 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
PROM1O43490 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16■□□□□ 0.15
PROM1O43490 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16■□□□□ 0.15
PROM1O43490 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
PROM1O43490 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16■□□□□ 0.15
PROM1O43490 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PROM1O43490 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PROM1O43490 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16■□□□□ 0.15
PROM1O43490 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PROM1O43490 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PROM1O43490 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
PROM1O43490 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16■□□□□ 0.15
PROM1O43490 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16■□□□□ 0.15
PROM1O43490 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PROM1O43490 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.15
PROM1O43490 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PROM1O43490 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16■□□□□ 0.15
PROM1O43490 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16■□□□□ 0.15
PROM1O43490 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PROM1O43490 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16■□□□□ 0.15
PROM1O43490 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PROM1O43490 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16■□□□□ 0.15
PROM1O43490 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16■□□□□ 0.15
PROM1O43490 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16■□□□□ 0.15
PROM1O43490 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PROM1O43490 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16■□□□□ 0.15
PROM1O43490 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms