Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CHFRQ96EP1 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.09■□□□□ 0.33
CHFRQ96EP1 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CHFRQ96EP1 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHFRQ96EP1 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CHFRQ96EP1 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHFRQ96EP1 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CHFRQ96EP1 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.08■□□□□ 0.33
CHFRQ96EP1 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.08■□□□□ 0.33
CHFRQ96EP1 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.08■□□□□ 0.33
CHFRQ96EP1 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CHFRQ96EP1 AC134043.2-201ENST00000624206 2238 ntBASIC17.08■□□□□ 0.33
CHFRQ96EP1 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CHFRQ96EP1 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CHFRQ96EP1 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CHFRQ96EP1 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.08■□□□□ 0.33
CHFRQ96EP1 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.08■□□□□ 0.32
CHFRQ96EP1 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.08■□□□□ 0.32
CHFRQ96EP1 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHFRQ96EP1 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHFRQ96EP1 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CHFRQ96EP1 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.32
CHFRQ96EP1 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.08■□□□□ 0.32
CHFRQ96EP1 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.08■□□□□ 0.32
CHFRQ96EP1 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC17.08■□□□□ 0.32
CHFRQ96EP1 AL512638.1-201ENST00000457493 794 ntBASIC17.08■□□□□ 0.32
CHFRQ96EP1 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.08■□□□□ 0.32
CHFRQ96EP1 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHFRQ96EP1 AC012645.4-201ENST00000610691 1061 ntBASIC17.08■□□□□ 0.32
CHFRQ96EP1 AL035252.4-201ENST00000624174 288 ntBASIC17.08■□□□□ 0.32
CHFRQ96EP1 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHFRQ96EP1 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHFRQ96EP1 LTB4R2-202ENST00000528054 3092 ntBASIC17.08■□□□□ 0.32
CHFRQ96EP1 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.08■□□□□ 0.32
CHFRQ96EP1 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHFRQ96EP1 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHFRQ96EP1 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHFRQ96EP1 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CHFRQ96EP1 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHFRQ96EP1 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 AL138688.1-201ENST00000624851 1594 ntBASIC17.07■□□□□ 0.32
CHFRQ96EP1 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 AC073389.1-201ENST00000595595 795 ntBASIC17.07■□□□□ 0.32
CHFRQ96EP1 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.07■□□□□ 0.32
CHFRQ96EP1 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CHFRQ96EP1 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 AL021920.2-201ENST00000624828 1351 ntBASIC17.06■□□□□ 0.32
CHFRQ96EP1 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 AC005034.1-201ENST00000426657 489 ntBASIC17.06■□□□□ 0.32
CHFRQ96EP1 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 SERBP1P5-201ENST00000510079 1181 ntBASIC17.06■□□□□ 0.32
CHFRQ96EP1 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 AC005225.4-201ENST00000557330 545 ntBASIC17.06■□□□□ 0.32
CHFRQ96EP1 RARRES2P9-201ENST00000565168 469 ntBASIC17.06■□□□□ 0.32
CHFRQ96EP1 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.06■□□□□ 0.32
CHFRQ96EP1 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CHFRQ96EP1 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms