Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1AQ8TE12 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 AC055876.3-201ENST00000431496 288 ntBASIC16.36■□□□□ 0.21
LMX1AQ8TE12 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 INGX-202ENST00000489074 768 ntBASIC16.36■□□□□ 0.21
LMX1AQ8TE12 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 MIR4745-201ENST00000577608 62 ntBASIC16.36■□□□□ 0.21
LMX1AQ8TE12 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 AC021097.1-201ENST00000607902 574 ntBASIC16.36■□□□□ 0.21
LMX1AQ8TE12 AC138649.4-201ENST00000612222 287 ntBASIC16.36■□□□□ 0.21
LMX1AQ8TE12 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1AQ8TE12 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 BASP1P1-201ENST00000430708 665 ntBASIC16.35■□□□□ 0.21
LMX1AQ8TE12 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 IGHV3-42-201ENST00000520410 361 ntBASIC16.35■□□□□ 0.21
LMX1AQ8TE12 ALG1L8P-201ENST00000533887 760 ntBASIC16.35■□□□□ 0.21
LMX1AQ8TE12 BAD-207ENST00000544785 525 ntTSL 3 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 MIR4492-201ENST00000581627 80 ntBASIC16.35■□□□□ 0.21
LMX1AQ8TE12 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC16.35■□□□□ 0.21
LMX1AQ8TE12 AC084121.4-201ENST00000641598 221 ntBASIC16.35■□□□□ 0.21
LMX1AQ8TE12 AF228730.8-201ENST00000642140 221 ntBASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms