Protein–RNA interactions for Protein: Q6PI97

C11orf88, UPF0722 protein C11orf88, humanhuman

Predictions only

Length 169 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C11orf88Q6PI97 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 NMU-205ENST00000511469 756 ntTSL 3 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 AL662844.4-201ENST00000606367 2838 ntBASIC14.79□□□□□ -0.04
C11orf88Q6PI97 AC024243.1-201ENST00000609234 778 ntBASIC14.79□□□□□ -0.04
C11orf88Q6PI97 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
C11orf88Q6PI97 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 C8orf49-201ENST00000525043 1968 ntBASIC14.78□□□□□ -0.04
C11orf88Q6PI97 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 KRT18P38-201ENST00000449496 1282 ntBASIC14.78□□□□□ -0.04
C11orf88Q6PI97 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 RASA4DP-201ENST00000460726 1199 ntBASIC14.78□□□□□ -0.04
C11orf88Q6PI97 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 NDUFV2-AS1-203ENST00000608008 779 ntBASIC14.78□□□□□ -0.04
C11orf88Q6PI97 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 AC092068.3-201ENST00000587894 2016 ntBASIC14.78□□□□□ -0.04
C11orf88Q6PI97 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 AL024508.2-201ENST00000607749 1894 ntBASIC14.78□□□□□ -0.04
C11orf88Q6PI97 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
C11orf88Q6PI97 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.77□□□□□ -0.04
C11orf88Q6PI97 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC14.77□□□□□ -0.04
C11orf88Q6PI97 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms