Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.46■□□□□ 0.07
RFC3P40938 AC254562.1-201ENST00000417586 456 ntBASIC15.46■□□□□ 0.07
RFC3P40938 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.46■□□□□ 0.07
RFC3P40938 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.46■□□□□ 0.07
RFC3P40938 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.46■□□□□ 0.07
RFC3P40938 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RFC3P40938 AP002472.1-201ENST00000577490 586 ntBASIC15.46■□□□□ 0.07
RFC3P40938 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
RFC3P40938 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
RFC3P40938 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.46■□□□□ 0.07
RFC3P40938 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
RFC3P40938 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RFC3P40938 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
RFC3P40938 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
RFC3P40938 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
RFC3P40938 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.46■□□□□ 0.07
RFC3P40938 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RFC3P40938 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.46■□□□□ 0.07
RFC3P40938 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
RFC3P40938 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.46■□□□□ 0.07
RFC3P40938 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
RFC3P40938 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
RFC3P40938 OR6D1P-203ENST00000641209 4860 ntBASIC15.46■□□□□ 0.06
RFC3P40938 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.46■□□□□ 0.06
RFC3P40938 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.45■□□□□ 0.06
RFC3P40938 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.45■□□□□ 0.06
RFC3P40938 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
RFC3P40938 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.45■□□□□ 0.06
RFC3P40938 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.45■□□□□ 0.06
RFC3P40938 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.45■□□□□ 0.06
RFC3P40938 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.45■□□□□ 0.06
RFC3P40938 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.45■□□□□ 0.06
RFC3P40938 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.45■□□□□ 0.06
RFC3P40938 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.45■□□□□ 0.06
RFC3P40938 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
RFC3P40938 AL596257.1-201ENST00000641463 2694 ntBASIC15.45■□□□□ 0.06
RFC3P40938 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.45■□□□□ 0.06
RFC3P40938 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
RFC3P40938 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
RFC3P40938 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
RFC3P40938 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.44■□□□□ 0.06
RFC3P40938 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.44■□□□□ 0.06
RFC3P40938 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
RFC3P40938 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
RFC3P40938 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
RFC3P40938 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
RFC3P40938 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
RFC3P40938 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.44■□□□□ 0.06
RFC3P40938 FALEC-201ENST00000416894 566 ntTSL 3 BASIC15.44■□□□□ 0.06
RFC3P40938 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.44■□□□□ 0.06
RFC3P40938 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
RFC3P40938 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.44■□□□□ 0.06
RFC3P40938 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.44■□□□□ 0.06
RFC3P40938 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
RFC3P40938 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.44■□□□□ 0.06
RFC3P40938 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
RFC3P40938 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 CROCCP2-202ENST00000412962 2773 ntBASIC15.44■□□□□ 0.06
RFC3P40938 EGFEM1P-202ENST00000431685 1563 ntBASIC15.44■□□□□ 0.06
RFC3P40938 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
RFC3P40938 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
RFC3P40938 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
RFC3P40938 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.44■□□□□ 0.06
RFC3P40938 CICP6-201ENST00000457191 2729 ntBASIC15.44■□□□□ 0.06
RFC3P40938 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms