Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 WARS-232ENST00000556645 2508 ntTSL 5 BASIC13.13□□□□□ -0.31
CXCL1P09341 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CXCL1P09341 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.13□□□□□ -0.31
CXCL1P09341 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CXCL1P09341 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CXCL1P09341 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.12□□□□□ -0.31
CXCL1P09341 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CXCL1P09341 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
CXCL1P09341 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC13.12□□□□□ -0.31
CXCL1P09341 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CXCL1P09341 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 AC005840.4-201ENST00000541242 2494 ntBASIC13.12□□□□□ -0.31
CXCL1P09341 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CXCL1P09341 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC13.12□□□□□ -0.31
CXCL1P09341 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC13.12□□□□□ -0.31
CXCL1P09341 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 REEP1-209ENST00000541910 969 ntTSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC13.12□□□□□ -0.31
CXCL1P09341 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC13.12□□□□□ -0.31
CXCL1P09341 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CXCL1P09341 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC13.12□□□□□ -0.31
CXCL1P09341 LINC00167-201ENST00000530583 1419 ntBASIC13.12□□□□□ -0.31
CXCL1P09341 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC13.12□□□□□ -0.31
CXCL1P09341 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.12□□□□□ -0.31
CXCL1P09341 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CXCL1P09341 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 AC007292.2-201ENST00000593524 1812 ntBASIC13.11□□□□□ -0.31
CXCL1P09341 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC13.11□□□□□ -0.31
CXCL1P09341 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
CXCL1P09341 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC13.11□□□□□ -0.31
CXCL1P09341 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CXCL1P09341 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC13.11□□□□□ -0.31
CXCL1P09341 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CXCL1P09341 CRYGFP-201ENST00000418459 633 ntBASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms