Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 AKR1C7P-201ENST00000305623 895 ntBASIC13.69□□□□□ -0.22
FOXA2Q9Y261 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 CBFB-203ENST00000561924 584 ntTSL 5 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 RN7SL510P-201ENST00000581311 263 ntBASIC13.69□□□□□ -0.22
FOXA2Q9Y261 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 SIGLEC16-201ENST00000599858 1437 ntBASIC13.69□□□□□ -0.22
FOXA2Q9Y261 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 AL391256.1-201ENST00000443260 1855 ntBASIC13.69□□□□□ -0.22
FOXA2Q9Y261 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 PAN3-AS1-201ENST00000563843 1351 ntBASIC13.69□□□□□ -0.22
FOXA2Q9Y261 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 AL645728.1-201ENST00000366221 2101 ntBASIC13.69□□□□□ -0.22
FOXA2Q9Y261 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
FOXA2Q9Y261 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 HIST2H3DP1-201ENST00000401004 416 ntBASIC13.68□□□□□ -0.22
FOXA2Q9Y261 TPM4P1-201ENST00000436100 807 ntBASIC13.68□□□□□ -0.22
FOXA2Q9Y261 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 AC073592.4-201ENST00000623827 446 ntBASIC13.68□□□□□ -0.22
FOXA2Q9Y261 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 AL021920.2-201ENST00000624828 1351 ntBASIC13.68□□□□□ -0.22
FOXA2Q9Y261 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
FOXA2Q9Y261 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 FGFR3P6-201ENST00000457012 610 ntBASIC13.67□□□□□ -0.22
FOXA2Q9Y261 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms