Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 TK2-213ENST00000563369 882 ntTSL 5 BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 AC111152.3-201ENST00000569699 673 ntBASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 AC066615.1-201ENST00000640911 628 ntBASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 AC097374.2-201ENST00000618617 1306 ntBASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CHMP1AQ9HD42 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 AL161772.1-201ENST00000610494 4412 ntBASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 AC073912.3-201ENST00000624414 853 ntBASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CHMP1AQ9HD42 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 AC132872.4-202ENST00000622924 2756 ntBASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
CHMP1AQ9HD42 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms