Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 AC132938.5-201ENST00000624980 1813 ntBASIC14.8□□□□□ -0.04
NKX3-1Q99801 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 AC111152.3-201ENST00000569699 673 ntBASIC14.8□□□□□ -0.04
NKX3-1Q99801 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 AP005901.3-202ENST00000581653 237 ntBASIC14.8□□□□□ -0.04
NKX3-1Q99801 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 VPS72-207ENST00000640458 689 ntTSL 5 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 AC007950.2-201ENST00000615045 2347 ntBASIC14.8□□□□□ -0.04
NKX3-1Q99801 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.8□□□□□ -0.04
NKX3-1Q99801 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
NKX3-1Q99801 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 ENSA-206ENST00000361631 725 ntTSL 2 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 AL391256.1-201ENST00000443260 1855 ntBASIC14.79□□□□□ -0.04
NKX3-1Q99801 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 STK19B-204ENST00000512515 211 ntBASIC14.79□□□□□ -0.04
NKX3-1Q99801 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 AC124947.2-201ENST00000547118 1133 ntBASIC14.79□□□□□ -0.04
NKX3-1Q99801 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 AC009336.1-201ENST00000608941 1553 ntBASIC14.79□□□□□ -0.04
NKX3-1Q99801 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC14.79□□□□□ -0.04
NKX3-1Q99801 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
NKX3-1Q99801 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
NKX3-1Q99801 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
NKX3-1Q99801 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms