Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HPS3Q969F9 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
HPS3Q969F9 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.71■□□□□ 0.59
HPS3Q969F9 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HPS3Q969F9 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HPS3Q969F9 PMS2P1-201ENST00000431037 1228 ntBASIC18.71■□□□□ 0.59
HPS3Q969F9 AC098831.1-202ENST00000438821 336 ntBASIC18.71■□□□□ 0.59
HPS3Q969F9 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.71■□□□□ 0.59
HPS3Q969F9 AC108073.2-201ENST00000464002 357 ntBASIC18.71■□□□□ 0.59
HPS3Q969F9 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.71■□□□□ 0.59
HPS3Q969F9 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.71■□□□□ 0.59
HPS3Q969F9 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.71■□□□□ 0.59
HPS3Q969F9 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.71■□□□□ 0.59
HPS3Q969F9 MIR1199-201ENST00000621445 119 ntBASIC18.71■□□□□ 0.59
HPS3Q969F9 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC18.71■□□□□ 0.59
HPS3Q969F9 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HPS3Q969F9 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HPS3Q969F9 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HPS3Q969F9 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HPS3Q969F9 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
HPS3Q969F9 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.71■□□□□ 0.59
HPS3Q969F9 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HPS3Q969F9 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HPS3Q969F9 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HPS3Q969F9 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HPS3Q969F9 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.7■□□□□ 0.58
HPS3Q969F9 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.7■□□□□ 0.58
HPS3Q969F9 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.7■□□□□ 0.58
HPS3Q969F9 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC18.7■□□□□ 0.58
HPS3Q969F9 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 PKD1P1-201ENST00000458669 6805 ntBASIC18.7■□□□□ 0.58
HPS3Q969F9 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.7■□□□□ 0.58
HPS3Q969F9 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
HPS3Q969F9 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.7■□□□□ 0.58
HPS3Q969F9 TPM4P1-201ENST00000436100 807 ntBASIC18.7■□□□□ 0.58
HPS3Q969F9 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.7■□□□□ 0.58
HPS3Q969F9 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.7■□□□□ 0.58
HPS3Q969F9 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HPS3Q969F9 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.7■□□□□ 0.58
HPS3Q969F9 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.7■□□□□ 0.58
HPS3Q969F9 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 AC006277.1-201ENST00000624348 1610 ntBASIC18.7■□□□□ 0.58
HPS3Q969F9 LINC00895-201ENST00000629028 1637 ntBASIC18.7■□□□□ 0.58
HPS3Q969F9 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC18.7■□□□□ 0.58
HPS3Q969F9 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.7■□□□□ 0.58
HPS3Q969F9 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HPS3Q969F9 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.7■□□□□ 0.58
HPS3Q969F9 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HPS3Q969F9 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.69■□□□□ 0.58
HPS3Q969F9 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
HPS3Q969F9 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC18.69■□□□□ 0.58
HPS3Q969F9 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.69■□□□□ 0.58
HPS3Q969F9 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
HPS3Q969F9 AP001005.1-201ENST00000571755 1248 ntBASIC18.69■□□□□ 0.58
HPS3Q969F9 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 AC005593.1-201ENST00000624894 515 ntBASIC18.69■□□□□ 0.58
HPS3Q969F9 ABBA01031661.1-201ENST00000634362 1253 ntBASIC18.69■□□□□ 0.58
HPS3Q969F9 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.69■□□□□ 0.58
HPS3Q969F9 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.69■□□□□ 0.58
HPS3Q969F9 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
HPS3Q969F9 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HPS3Q969F9 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.69■□□□□ 0.58
HPS3Q969F9 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HPS3Q969F9 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms