Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 TFAMP1-201ENST00000412727 736 ntBASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 FAM8A3P-201ENST00000427218 844 ntBASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 AC005237.2-201ENST00000434368 219 ntBASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 AC079140.1-201ENST00000508039 487 ntBASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 AP001094.4-201ENST00000579008 2176 ntBASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHKBP1Q8TBC3 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 AL592309.1-201ENST00000443127 649 ntBASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 AC243562.1-201ENST00000560672 389 ntBASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 AL135744.1-201ENST00000565098 629 ntBASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 RARRES2P8-201ENST00000566335 367 ntBASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 AC011467.4-201ENST00000594891 528 ntBASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHKBP1Q8TBC3 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 RN7SL589P-201ENST00000481268 310 ntBASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 DUX4L17-201ENST00000557360 1267 ntBASIC17.68■□□□□ 0.42
SHKBP1Q8TBC3 SPCS2P1-201ENST00000561636 679 ntBASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms