Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.9■□□□□ 0.62
MSH4O15457 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.9■□□□□ 0.62
MSH4O15457 MIR3909-201ENST00000579518 119 ntBASIC18.9■□□□□ 0.62
MSH4O15457 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.9■□□□□ 0.62
MSH4O15457 AC134684.3-201ENST00000641758 218 ntBASIC18.9■□□□□ 0.62
MSH4O15457 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH4O15457 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
MSH4O15457 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
MSH4O15457 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH4O15457 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH4O15457 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH4O15457 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH4O15457 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
MSH4O15457 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
MSH4O15457 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH4O15457 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.9■□□□□ 0.62
MSH4O15457 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
MSH4O15457 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH4O15457 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MSH4O15457 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MSH4O15457 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
MSH4O15457 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
MSH4O15457 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
MSH4O15457 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.89■□□□□ 0.61
MSH4O15457 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.89■□□□□ 0.61
MSH4O15457 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC18.89■□□□□ 0.61
MSH4O15457 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
MSH4O15457 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.89■□□□□ 0.61
MSH4O15457 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC18.89■□□□□ 0.61
MSH4O15457 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.89■□□□□ 0.61
MSH4O15457 AC211486.1-202ENST00000416371 468 ntBASIC18.89■□□□□ 0.61
MSH4O15457 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
MSH4O15457 ADH5P3-201ENST00000433842 1137 ntBASIC18.89■□□□□ 0.61
MSH4O15457 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.89■□□□□ 0.61
MSH4O15457 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.89■□□□□ 0.61
MSH4O15457 AC211476.1-201ENST00000503899 468 ntBASIC18.89■□□□□ 0.61
MSH4O15457 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.89■□□□□ 0.61
MSH4O15457 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.89■□□□□ 0.61
MSH4O15457 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
MSH4O15457 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.89■□□□□ 0.61
MSH4O15457 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.89■□□□□ 0.61
MSH4O15457 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.89■□□□□ 0.61
MSH4O15457 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.89■□□□□ 0.61
MSH4O15457 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.89■□□□□ 0.61
MSH4O15457 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
MSH4O15457 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.89■□□□□ 0.61
MSH4O15457 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.89■□□□□ 0.61
MSH4O15457 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MSH4O15457 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.89■□□□□ 0.61
MSH4O15457 AC106886.4-201ENST00000623557 2502 ntBASIC18.89■□□□□ 0.61
MSH4O15457 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
MSH4O15457 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
MSH4O15457 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
MSH4O15457 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH4O15457 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH4O15457 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSH4O15457 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH4O15457 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH4O15457 PMS2P4-201ENST00000412466 1052 ntBASIC18.88■□□□□ 0.61
MSH4O15457 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.88■□□□□ 0.61
MSH4O15457 ACTG1P14-201ENST00000446382 1122 ntBASIC18.88■□□□□ 0.61
MSH4O15457 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
MSH4O15457 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.88■□□□□ 0.61
MSH4O15457 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC18.88■□□□□ 0.61
MSH4O15457 AL691403.2-201ENST00000618460 490 ntBASIC18.88■□□□□ 0.61
MSH4O15457 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
MSH4O15457 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH4O15457 KRT8P39-201ENST00000396270 1433 ntBASIC18.88■□□□□ 0.61
MSH4O15457 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH4O15457 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSH4O15457 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
MSH4O15457 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH4O15457 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
MSH4O15457 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSH4O15457 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.88■□□□□ 0.61
MSH4O15457 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
MSH4O15457 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
MSH4O15457 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
MSH4O15457 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.88■□□□□ 0.61
MSH4O15457 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.87■□□□□ 0.61
MSH4O15457 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSH4O15457 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.87■□□□□ 0.61
MSH4O15457 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms