Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 AC092119.3-201ENST00000612618 583 ntBASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 MYB-201ENST00000316528 3571 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 MYB-241ENST00000616088 3573 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC39Q9UFE4 INTS4P1-201ENST00000438455 1935 ntBASIC19.64■□□□□ 0.74
CCDC39Q9UFE4 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC39Q9UFE4 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC39Q9UFE4 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 AC093458.2-201ENST00000623150 629 ntBASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 FUT8-AS1-201ENST00000621019 1521 ntBASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CCDC39Q9UFE4 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 RCN1P2-201ENST00000398357 915 ntBASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 STK19B-204ENST00000512515 211 ntBASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 AD001527.2-201ENST00000622994 785 ntBASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC19.63■□□□□ 0.73
CCDC39Q9UFE4 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 AL662844.4-201ENST00000606367 2838 ntBASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCDC39Q9UFE4 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms