Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 AC092053.1-201ENST00000605787 1936 ntBASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 RHOQP3-201ENST00000437982 621 ntBASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 CALM1-205ENST00000553542 877 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 AC040169.1-201ENST00000565382 521 ntBASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM39Q9HCM9 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 AL021920.2-201ENST00000624828 1351 ntBASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 AC107918.2-201ENST00000530817 355 ntBASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 DUX4L17-201ENST00000557360 1267 ntBASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
TRIM39Q9HCM9 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM39Q9HCM9 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms