Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP3Q96DZ5 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP3Q96DZ5 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.39■□□□□ 0.22
CLIP3Q96DZ5 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 AC004832.2-201ENST00000426397 482 ntBASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 PRSS29P-201ENST00000440800 595 ntBASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 KRT18P2-201ENST00000447938 1258 ntBASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 MTDHP5-201ENST00000598980 586 ntBASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 AC010654.1-201ENST00000615722 808 ntBASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 AL691403.2-201ENST00000618460 490 ntBASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 AL135999.2-201ENST00000622438 1686 ntBASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CLIP3Q96DZ5 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 RPSAP43-201ENST00000402237 625 ntBASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 GPX1P2-201ENST00000429271 606 ntBASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
CLIP3Q96DZ5 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLIP3Q96DZ5 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
CLIP3Q96DZ5 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLIP3Q96DZ5 GNAS-203ENST00000306120 1878 ntBASIC16.37■□□□□ 0.21
CLIP3Q96DZ5 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.37■□□□□ 0.21
CLIP3Q96DZ5 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
CLIP3Q96DZ5 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLIP3Q96DZ5 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CLIP3Q96DZ5 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.37■□□□□ 0.21
CLIP3Q96DZ5 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.37■□□□□ 0.21
CLIP3Q96DZ5 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CLIP3Q96DZ5 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CLIP3Q96DZ5 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms