Protein–RNA interactions for Protein: Q6PIL6

KCNIP4, Kv channel-interacting protein 4, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP4Q6PIL6 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 AL023284.2-201ENST00000405850 579 ntBASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
KCNIP4Q6PIL6 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 HLA-DQB2-231ENST00000435145 2026 ntBASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 BLK-205ENST00000529894 2017 ntTSL 5 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 TNRC18P2-201ENST00000417666 2714 ntBASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 HLA-A-202ENST00000376806 1854 ntBASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 ISG20-202ENST00000379224 540 ntTSL 3 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 SRP19-202ENST00000445150 833 ntTSL 2 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 AP002490.2-201ENST00000524791 560 ntBASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 RARRES2P10-201ENST00000564312 460 ntBASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 NAT14-202ENST00000587400 416 ntTSL 5 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 AC073648.6-201ENST00000641589 218 ntBASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 AC073347.1-201ENST00000421633 2643 ntBASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 AC036111.1-201ENST00000533973 1582 ntBASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
KCNIP4Q6PIL6 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.15□□□□□ -0.31
KCNIP4Q6PIL6 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.31
KCNIP4Q6PIL6 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.14□□□□□ -0.31
KCNIP4Q6PIL6 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC13.14□□□□□ -0.31
KCNIP4Q6PIL6 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
KCNIP4Q6PIL6 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
KCNIP4Q6PIL6 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
KCNIP4Q6PIL6 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
KCNIP4Q6PIL6 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
KCNIP4Q6PIL6 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC13.14□□□□□ -0.31
KCNIP4Q6PIL6 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
KCNIP4Q6PIL6 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
KCNIP4Q6PIL6 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
KCNIP4Q6PIL6 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
KCNIP4Q6PIL6 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms