Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
MSX2P35548 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.21■□□□□ 0.18
MSX2P35548 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
MSX2P35548 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
MSX2P35548 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.2■□□□□ 0.18
MSX2P35548 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.2■□□□□ 0.18
MSX2P35548 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.2■□□□□ 0.18
MSX2P35548 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
MSX2P35548 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
MSX2P35548 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.2■□□□□ 0.18
MSX2P35548 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.2■□□□□ 0.18
MSX2P35548 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.2■□□□□ 0.18
MSX2P35548 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
MSX2P35548 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.2■□□□□ 0.18
MSX2P35548 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.2■□□□□ 0.18
MSX2P35548 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.2■□□□□ 0.18
MSX2P35548 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
MSX2P35548 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 GPR89P-201ENST00000407924 1495 ntBASIC16.2■□□□□ 0.18
MSX2P35548 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
MSX2P35548 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.2■□□□□ 0.18
MSX2P35548 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.2■□□□□ 0.18
MSX2P35548 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
MSX2P35548 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.2■□□□□ 0.18
MSX2P35548 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
MSX2P35548 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.2■□□□□ 0.18
MSX2P35548 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
MSX2P35548 KRT8P10-201ENST00000450021 1447 ntBASIC16.19■□□□□ 0.18
MSX2P35548 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.19■□□□□ 0.18
MSX2P35548 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.19■□□□□ 0.18
MSX2P35548 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.19■□□□□ 0.18
MSX2P35548 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC16.19■□□□□ 0.18
MSX2P35548 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.19■□□□□ 0.18
MSX2P35548 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 MTHFR-217ENST00000641820 1569 ntBASIC16.19■□□□□ 0.18
MSX2P35548 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
MSX2P35548 SPDYE15P-201ENST00000424157 909 ntBASIC16.19■□□□□ 0.18
MSX2P35548 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
MSX2P35548 SNORA78-201ENST00000459373 127 ntBASIC16.19■□□□□ 0.18
MSX2P35548 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
MSX2P35548 AC008550.1-201ENST00000511500 884 ntBASIC16.19■□□□□ 0.18
MSX2P35548 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.19■□□□□ 0.18
MSX2P35548 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.19■□□□□ 0.18
MSX2P35548 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC16.19■□□□□ 0.18
MSX2P35548 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.19■□□□□ 0.18
MSX2P35548 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.19■□□□□ 0.18
MSX2P35548 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.19■□□□□ 0.18
MSX2P35548 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
MSX2P35548 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSX2P35548 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.19■□□□□ 0.18
MSX2P35548 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.19■□□□□ 0.18
MSX2P35548 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.18■□□□□ 0.18
MSX2P35548 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.18■□□□□ 0.18
MSX2P35548 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.18■□□□□ 0.18
MSX2P35548 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
MSX2P35548 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.18■□□□□ 0.18
MSX2P35548 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.18■□□□□ 0.18
MSX2P35548 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.18■□□□□ 0.18
MSX2P35548 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSX2P35548 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms