Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN4P29074 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.06■□□□□ 0.32
PTPN4P29074 AL591684.3-201ENST00000605187 298 ntBASIC17.06■□□□□ 0.32
PTPN4P29074 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PTPN4P29074 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.06■□□□□ 0.32
PTPN4P29074 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.06■□□□□ 0.32
PTPN4P29074 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN4P29074 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN4P29074 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.06■□□□□ 0.32
PTPN4P29074 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN4P29074 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN4P29074 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN4P29074 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PTPN4P29074 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN4P29074 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.06■□□□□ 0.32
PTPN4P29074 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PTPN4P29074 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN4P29074 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.06■□□□□ 0.32
PTPN4P29074 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN4P29074 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN4P29074 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN4P29074 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
PTPN4P29074 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
PTPN4P29074 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.05■□□□□ 0.32
PTPN4P29074 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 AC005052.1-201ENST00000625181 2492 ntBASIC17.05■□□□□ 0.32
PTPN4P29074 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
PTPN4P29074 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.05■□□□□ 0.32
PTPN4P29074 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 MRPL3P1-201ENST00000400109 1033 ntBASIC17.05■□□□□ 0.32
PTPN4P29074 AL022342.1-201ENST00000400363 863 ntBASIC17.05■□□□□ 0.32
PTPN4P29074 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.05■□□□□ 0.32
PTPN4P29074 BNIP3P18-201ENST00000593976 575 ntBASIC17.05■□□□□ 0.32
PTPN4P29074 AC064862.7-201ENST00000604520 867 ntBASIC17.05■□□□□ 0.32
PTPN4P29074 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
PTPN4P29074 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.05■□□□□ 0.32
PTPN4P29074 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.05■□□□□ 0.32
PTPN4P29074 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
PTPN4P29074 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
PTPN4P29074 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PTPN4P29074 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN4P29074 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.04■□□□□ 0.32
PTPN4P29074 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
PTPN4P29074 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.04■□□□□ 0.32
PTPN4P29074 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.04■□□□□ 0.32
PTPN4P29074 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.04■□□□□ 0.32
PTPN4P29074 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.04■□□□□ 0.32
PTPN4P29074 AF238378.1-201ENST00000526806 358 ntBASIC17.04■□□□□ 0.32
PTPN4P29074 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.04■□□□□ 0.32
PTPN4P29074 MIR5100-201ENST00000579544 119 ntBASIC17.04■□□□□ 0.32
PTPN4P29074 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PTPN4P29074 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN4P29074 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.04■□□□□ 0.32
PTPN4P29074 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms