Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.33■□□□□ 0.37
COL6A3P12111 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.33■□□□□ 0.37
COL6A3P12111 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A3P12111 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A3P12111 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A3P12111 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A3P12111 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.33■□□□□ 0.36
COL6A3P12111 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A3P12111 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC17.33■□□□□ 0.36
COL6A3P12111 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A3P12111 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.33■□□□□ 0.36
COL6A3P12111 AC008687.7-202ENST00000637404 953 ntBASIC17.33■□□□□ 0.36
COL6A3P12111 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.33■□□□□ 0.36
COL6A3P12111 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC17.33■□□□□ 0.36
COL6A3P12111 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A3P12111 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A3P12111 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A3P12111 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A3P12111 KRT8P22-201ENST00000562317 1415 ntBASIC17.33■□□□□ 0.36
COL6A3P12111 CLK3P2-201ENST00000427566 1453 ntBASIC17.33■□□□□ 0.36
COL6A3P12111 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A3P12111 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A3P12111 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A3P12111 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
COL6A3P12111 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC17.32■□□□□ 0.36
COL6A3P12111 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.32■□□□□ 0.36
COL6A3P12111 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC17.32■□□□□ 0.36
COL6A3P12111 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC17.32■□□□□ 0.36
COL6A3P12111 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC17.32■□□□□ 0.36
COL6A3P12111 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A3P12111 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A3P12111 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A3P12111 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
COL6A3P12111 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC17.32■□□□□ 0.36
COL6A3P12111 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
COL6A3P12111 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A3P12111 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A3P12111 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC17.32■□□□□ 0.36
COL6A3P12111 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A3P12111 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A3P12111 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.32■□□□□ 0.36
COL6A3P12111 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.32■□□□□ 0.36
COL6A3P12111 AC069218.1-201ENST00000435269 762 ntBASIC17.32■□□□□ 0.36
COL6A3P12111 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC17.32■□□□□ 0.36
COL6A3P12111 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
COL6A3P12111 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.32■□□□□ 0.36
COL6A3P12111 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
COL6A3P12111 AP001505.2-201ENST00000616815 443 ntBASIC17.32■□□□□ 0.36
COL6A3P12111 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A3P12111 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
COL6A3P12111 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A3P12111 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.31■□□□□ 0.36
COL6A3P12111 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.31■□□□□ 0.36
COL6A3P12111 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.31■□□□□ 0.36
COL6A3P12111 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.31■□□□□ 0.36
COL6A3P12111 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
COL6A3P12111 HLA-DQB2-229ENST00000411527 1059 ntBASIC17.31■□□□□ 0.36
COL6A3P12111 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.31■□□□□ 0.36
COL6A3P12111 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC17.31■□□□□ 0.36
COL6A3P12111 AC002558.1-201ENST00000488906 803 ntBASIC17.31■□□□□ 0.36
COL6A3P12111 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.31■□□□□ 0.36
COL6A3P12111 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC17.31■□□□□ 0.36
COL6A3P12111 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.31■□□□□ 0.36
COL6A3P12111 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A3P12111 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.3■□□□□ 0.36
COL6A3P12111 MGST3-203ENST00000367885 680 ntTSL 2 BASIC17.3■□□□□ 0.36
COL6A3P12111 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC17.3■□□□□ 0.36
COL6A3P12111 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.3■□□□□ 0.36
COL6A3P12111 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC17.3■□□□□ 0.36
COL6A3P12111 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
COL6A3P12111 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.3■□□□□ 0.36
COL6A3P12111 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 DUTP2-201ENST00000519164 463 ntBASIC17.3■□□□□ 0.36
COL6A3P12111 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.3■□□□□ 0.36
COL6A3P12111 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.3■□□□□ 0.36
COL6A3P12111 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.3■□□□□ 0.36
COL6A3P12111 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A3P12111 UFM1-202ENST00000379649 846 ntTSL 4 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms