Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.56■□□□□ 0.24
SIX3O95343 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.56■□□□□ 0.24
SIX3O95343 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
SIX3O95343 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
SIX3O95343 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX3O95343 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.56■□□□□ 0.24
SIX3O95343 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SIX3O95343 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
SIX3O95343 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
SIX3O95343 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
SIX3O95343 AL021920.2-201ENST00000624828 1351 ntBASIC16.56■□□□□ 0.24
SIX3O95343 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SIX3O95343 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SIX3O95343 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.56■□□□□ 0.24
SIX3O95343 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX3O95343 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.56■□□□□ 0.24
SIX3O95343 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.56■□□□□ 0.24
SIX3O95343 TERC-201ENST00000602385 541 ntBASIC16.56■□□□□ 0.24
SIX3O95343 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SIX3O95343 AL022326.1-202ENST00000641533 845 ntBASIC16.56■□□□□ 0.24
SIX3O95343 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX3O95343 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
SIX3O95343 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX3O95343 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SIX3O95343 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.56■□□□□ 0.24
SIX3O95343 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SIX3O95343 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
SIX3O95343 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.56■□□□□ 0.24
SIX3O95343 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX3O95343 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX3O95343 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
SIX3O95343 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
SIX3O95343 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
SIX3O95343 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
SIX3O95343 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.55■□□□□ 0.24
SIX3O95343 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.55■□□□□ 0.24
SIX3O95343 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.55■□□□□ 0.24
SIX3O95343 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.55■□□□□ 0.24
SIX3O95343 NCF1C-201ENST00000438382 1427 ntBASIC16.55■□□□□ 0.24
SIX3O95343 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 AC005052.1-201ENST00000625181 2492 ntBASIC16.55■□□□□ 0.24
SIX3O95343 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.55■□□□□ 0.24
SIX3O95343 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
SIX3O95343 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.55■□□□□ 0.24
SIX3O95343 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 MTDHP3-201ENST00000594186 672 ntBASIC16.55■□□□□ 0.24
SIX3O95343 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.55■□□□□ 0.24
SIX3O95343 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SIX3O95343 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.55■□□□□ 0.24
SIX3O95343 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SIX3O95343 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.55■□□□□ 0.24
SIX3O95343 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SIX3O95343 AL356309.3-201ENST00000624132 1934 ntBASIC16.55■□□□□ 0.24
SIX3O95343 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.55■□□□□ 0.24
SIX3O95343 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX3O95343 KRT8P49-201ENST00000604166 1432 ntBASIC16.54■□□□□ 0.24
SIX3O95343 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SIX3O95343 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX3O95343 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SIX3O95343 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SIX3O95343 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX3O95343 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.54■□□□□ 0.24
SIX3O95343 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
SIX3O95343 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SIX3O95343 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.54■□□□□ 0.24
SIX3O95343 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX3O95343 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX3O95343 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX3O95343 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX3O95343 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
SIX3O95343 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
SIX3O95343 HCG4P8-203ENST00000443049 980 ntBASIC16.54■□□□□ 0.24
SIX3O95343 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SIX3O95343 MIR3652-201ENST00000579335 131 ntBASIC16.54■□□□□ 0.24
SIX3O95343 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.54■□□□□ 0.24
SIX3O95343 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
SIX3O95343 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.54■□□□□ 0.24
SIX3O95343 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SIX3O95343 LINC00895-201ENST00000629028 1637 ntBASIC16.54■□□□□ 0.24
SIX3O95343 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX3O95343 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX3O95343 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX3O95343 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX3O95343 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.54■□□□□ 0.24
SIX3O95343 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.54■□□□□ 0.24
SIX3O95343 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SIX3O95343 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SIX3O95343 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms