Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
LDB3O75112 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
LDB3O75112 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
LDB3O75112 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.92■□□□□ 0.14
LDB3O75112 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.92■□□□□ 0.14
LDB3O75112 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.92■□□□□ 0.14
LDB3O75112 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LDB3O75112 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
LDB3O75112 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
LDB3O75112 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
LDB3O75112 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
LDB3O75112 AC129492.6-201ENST00000611383 1305 ntBASIC15.92■□□□□ 0.14
LDB3O75112 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.91■□□□□ 0.14
LDB3O75112 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.91■□□□□ 0.14
LDB3O75112 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.91■□□□□ 0.14
LDB3O75112 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 TOP3BP1-201ENST00000420768 1380 ntBASIC15.91■□□□□ 0.14
LDB3O75112 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LDB3O75112 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.91■□□□□ 0.14
LDB3O75112 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
LDB3O75112 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.91■□□□□ 0.14
LDB3O75112 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.91■□□□□ 0.14
LDB3O75112 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC15.91■□□□□ 0.14
LDB3O75112 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.91■□□□□ 0.14
LDB3O75112 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.91■□□□□ 0.14
LDB3O75112 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.91■□□□□ 0.14
LDB3O75112 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.91■□□□□ 0.14
LDB3O75112 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC15.91■□□□□ 0.14
LDB3O75112 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LDB3O75112 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
LDB3O75112 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.9■□□□□ 0.14
LDB3O75112 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LDB3O75112 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.9■□□□□ 0.14
LDB3O75112 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LDB3O75112 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LDB3O75112 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LDB3O75112 AL645728.1-201ENST00000366221 2101 ntBASIC15.9■□□□□ 0.14
LDB3O75112 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LDB3O75112 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.9■□□□□ 0.14
LDB3O75112 IGLL3P-201ENST00000412472 434 ntBASIC15.9■□□□□ 0.14
LDB3O75112 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.9■□□□□ 0.14
LDB3O75112 AP000347.1-202ENST00000435868 847 ntBASIC15.9■□□□□ 0.14
LDB3O75112 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.9■□□□□ 0.14
LDB3O75112 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.9■□□□□ 0.14
LDB3O75112 HCG4B-203ENST00000450128 991 ntBASIC15.9■□□□□ 0.14
LDB3O75112 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.9■□□□□ 0.14
LDB3O75112 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.9■□□□□ 0.14
LDB3O75112 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms